Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1540 ATGGATTCTTCTGCCATCGTGGGTAGCTCAATTTCCGAGCCTCATCATGATATGGAATTTGAATCTCATGAAGCTGCATATGCATTTTATAAAGAATATGCTAAGTCTGCAGGGTTTGGCACTGCTAAGCTGAGCAGTCGGCGATCTAGGGCATCCAAAGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGCCCTTCTCCAAAAATTGGTTGTAAAGCAAGCATGCATGTAAAGAGAAGGCAAGATGGTAAATGGTATGTCTACAGCTTTGTGAAGGAGCATAATCATGAACTTTTACCGGCTCAGGCTCATTTTTTTCGGAGTCACAGGAGTTCTGATCCACTAGGTAATGATGTTCGAATGCGTAGGCGGAAGACCTCAAATGCAGTTTCTAAATTATTTAGTGCATATCAGAATGTTGATTGCTTAGAGAACTTTGTGAAACATCAACATGATAAAGGGCGAAGTTTGGTTCTAGAAGCAGGACATGCTCAATTACTTCTTGAGCTCTTCATGCACATGCAAGAAGAGAATCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAACATCGACTAAGAAATGTGTTCTGGGTTGATGCTAAAGGCTTGGAAAATTTTACATACTTTTCTGATGTTGTTTCTTTTGACACAACATATTTTACTAGCAAATATAAAATACCATTGGTACTTTTCGTTGGAGTAAACCATCACATTCAACCAACATTGCTTGGTTGTGCATTGATTGCTGATGAGACAATATTTACCTATGCTTGGTTACTGCAAACATGGTTGATAGCAATGGGGGAGCGAGCACCGCAAGTGCTTCTCACAGACCAAAACGATGCTATTAAAGCAGCTGTTGCCACTTTTCTTCCAGGAACACGTCATTGTTTTTGTTTGTGGCATATTCTGGAAAAGATACCAAAACAACTACAAATTTTAGGCGCATGGCATGATAGCTTTATGGAAAAATTTAACAAATGTATATTCAGATCGTGGACAGAGGAGCAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAGCTTTAGCCTTGGAGATGTTGAATGGATTCGATCCTTATACGATGACCGTACATGTTGGGTGCCAACATTTATGAAAGATATTTCCTTTGCGGGTTTGTCTACTAGTTCTCGTTCTGAAAGTTTAAATTCATTGCTTGACAACTATATCCATGTTGATTCTTCTTTGAGAGAATTTATAGAACAATATAGAGTGATTCTTGAAGATAGGCATGAAGAGGAAGCCAAAGCAAATTTTGATGCTTGGCATGAAACACCTGACCTGAAGTCTCCTTCCCCTTTTGAAAAACAAATGCTGTTAGTTTACACCCATGAAATTTTTAGAAAGTTCCAGGTTGAGGTGTTGGGTGCAGCTGCTTGCCATCTTAAGAAAGAAAGTGATGGTGTGACCACTACTTATACTGTGAAAGATTTCGAAAATAGTCAAAACTATTTGGTAGAATGGAACATGTCCGCCTCAGATATATGCTGTTCATGTCGTTTGTTTGAATATAAAGGTTATCTCTGTAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATTCCACCAAAGTATATATTGCAAAGATGGACAAATGCTGCTATGAGCAGGCACCCTATTGGTGAAAAATTGGAAGTGGTTCAATCAAAGGTGCGGCGATTCAATGATTTGTGTAGGCGGGCCATAATATTAGGCGAAGAAGGTTCTTTATCACCGGAAAGTTACTACATGGCTTTAGGTGCCATCAGTGAGGCACTAAAACAATGTGTAAATTTGAACAACCCTGTTGAAAATGGTATGAGACCTGATGCCTCATGTACCCATGTTGTTTGTAATGTTGAAGAAGAATATCAATCTATTATTACATCTAACCATAAGGTCCCTGATCCGAAACTGAATATGGGAAAGAAGGCTGTGAGAATTGGTGTGGCTTGTAGGAGTCAAGGAGGTGTCGAAAACAGTGGAGGTGATAAAGGAAAGGTATCTCTTGTTGAAGCAGGTAGTGCGAAAGATGGTTTTCAACATATGGAGCTTACTGATCCGAGATCACAGGGTGTCATGGCAATGCAGTTTCACAATGTGGTACCTGCTCTGTTCCATAATGTTTCTGCACCCTTTCACACTGCACCTTCACCTCATATGCACGAGAATCGTTAG 2232 0.3934 MDSSAIVGSSISEPHHDMEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLGNDVRMRRRKTSNAVSKLFSAYQNVDCLENFVKHQHDKGRSLVLEAGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLENFTYFSDVVSFDTTYFTSKYKIPLVLFVGVNHHIQPTLLGCALIADETIFTYAWLLQTWLIAMGERAPQVLLTDQNDAIKAAVATFLPGTRHCFCLWHILEKIPKQLQILGAWHDSFMEKFNKCIFRSWTEEQFEKRWWKLVDSFSLGDVEWIRSLYDDRTCWVPTFMKDISFAGLSTSSRSESLNSLLDNYIHVDSSLREFIEQYRVILEDRHEEEAKANFDAWHETPDLKSPSPFEKQMLLVYTHEIFRKFQVEVLGAAACHLKKESDGVTTTYTVKDFENSQNYLVEWNMSASDICCSCRLFEYKGYLCRHAIVVLQMSGVFSIPPKYILQRWTNAAMSRHPIGEKLEVVQSKVRRFNDLCRRAIILGEEGSLSPESYYMALGAISEALKQCVNLNNPVENGMRPDASCTHVVCNVEEEYQSIITSNHKVPDPKLNMGKKAVRIGVACRSQGGVENSGGDKGKVSLVEAGSAKDGFQHMELTDPRSQGVMAMQFHNVVPALFHNVSAPFHTAPSPHMHENR* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1540 743 Pfam MULE transposase domain 227 320 IPR018289 -
Pvu5g1540 743 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Pvu5g1540 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 4 2 707 - -
Pvu5g1540 743 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
Pvu5g1540 743 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 2 707 IPR031052 GO:0006355
Pvu5g1540 743 Pfam SWIM zinc finger 506 540 IPR007527 GO:0008270
Pvu5g1540 743 SMART 26again6 517 544 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1540 Pvu-Chr5 37673832 37678338 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Pvu5g1540 MULE 3.1e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1540 - - gmx:100805273 1377.46