Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1533 ATGACTCACCCCTACTGCTCCAATGACTTCAATGCCTGGTTTGACCTCAATTCTCCATTCATTTTCTCCTCTTCTTCATCACCTTGCTCCAACAACCCTCCATTCTACTTTCCTTCTACTTATCATCATCACAACTTCCCAAGTGGCATCTCTTTTACTCCCCATCAATCCTCTCCCCCCAAAGAAGCACTTCCTCTCCTTAACCTAAGCCCTGCAAGAGGTGAAGATCTTGAATCTTGCTTTAGTGTCATGAAAGTCAACAAAGAGAAGGAGATAGAACTAAGCATGTTGTCTAGTAATAATAGCTCTTTGGATGATGATGAGACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAAGCACTACCACTTCCTCTGATTTAACCTCAAACACATGCTCAGACAAAGAAAAAGCCACTGTTGGTTCTGAGTATTCTCCTACCAGAATTAACAAGGGTCAGTATTGGATCCCTACCCCTGCTCAAATTCTCATCGGTCCAACACAGTTCTCATGCCCCCTTTGTTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAGGGACCAGAGTCCCTAAGGGGAACTCAACCAACTGCAATGCTTAGACTCCCTTGCTATTGTTGTGCAGCTGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTCAGAACCCTCCAAACTCATTACAAGAGAAAGCATGGAATCAAACCCTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGATTGGAGGACCCACGAGAAGAACTGTGGGAAGCTATGGTATTGCTCTTGTGGCTCAGACTTCAAGCACAAAAGATCTCTTAAAGATCATATCAAGGCATTTGGGAATGGACATAAAGCTTATGGAATCGACTGTCTTGATCAAGATGATGAACCTGGCTCTGAAATTGAGCAAGAAAGTGTTAATGAATCTTTAGTTTCAATTCATAGTTGA 1011 0.4322 MTHPYCSNDFNAWFDLNSPFIFSSSSSPCSNNPPFYFPSTYHHHNFPSGISFTPHQSSPPKEALPLLNLSPARGEDLESCFSVMKVNKEKEIELSMLSSNNSSLDDDETVTVALHLGLPSTTTSSDLTSNTCSDKEKATVGSEYSPTRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAAGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCLDQDDEPGSEIEQESVNESLVSIHS* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1533 336 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Pvu5g1533 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Pvu5g1533 336 SUPERFAMILY beta-beta-alpha zinc fingers 235 273 IPR036236 -
Pvu5g1533 336 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 1 326 - -
Pvu5g1533 336 Gene3D Classic Zinc Finger 168 191 - -
Pvu5g1533 336 PANTHER ZINC FINGER PROTEIN WIP2 1 326 IPR043584 GO:0003700|GO:0010468
Pvu5g1533 336 Gene3D Classic Zinc Finger 250 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1533 Pvu-Chr5 37617397 37619615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1533 61 333 C2H2 Transcription Factor Family AT3G57670 60.443 2.29e-128 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g1533 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1533 - - gmx:100801922 570.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1533 5 37617397 37619615 Pvu5g1533 5 37617397 37619615 ECH
Pvu1g1422 1 38316315 38318940 Pvu5g1533 5 37617397 37619615 ECH
Pvu7g2630 7 49378555 49381137 Pvu5g1533 5 37617397 37619615 ECH
Pvu5g1533 5 37617397 37619615 Pvu11g0602 11 5079595 5082040 PCT