Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1531 ATGAATGGTTCGGGTTTGGGTGGTGGCTTTTTGTCTGGCCCCAGTGGGGGGATTTTGGACTTGGAATCTTCATTTCATAGACACCAACAGACTCAGCTGGGTCATCCATCAATTACTGGTCAACAGCAGTTGAATATCATGAGTGGTCTTGAAAGTGATCACCCCATTGGCCTGATTGAAGTGAAAAATTTGAATGCGGCGTTGAATTTTGGTAAAGGAAAGGCAATTGCTCCTTCCGATAGTAATGAGTTGAGTGACGAGGATGAGCCTAGCTATGCAGAAGAAGGGAATTGTGAGAACCTGGATGGTGGGAAGGGCAAAAAGGGGTCTCCTTGGCAGCGAATGAAGTGGACGGATAATGTGGTTAGGCTTCTTATAACAGTGGTGAGTTGTGTGGGTGATGATGGCACTATTGCAGGCATGGATGGTCACAAAAGGAAATCTGGGGTTTTACAGAAGAAGGGCAAGTGGAAAACAGTCTCCAAGATAATGATAAGCAAGGGTTGTCATGTGTCGCCACAGCAGTGTGAGGACAAGTTCAACGACTTAAATAAGAGATACAAGAGGTTAAATGACATACTTGGAAGGGGAACTTGTTGTCAAGTGGTTGAGAATCCGGCGTTAATGGATTCAATACCTAACCTGTCAGCTAAGATGAAGGATGATGTTAGGAAGATCTTGAGCTCAAAACACTTGTTTTATAAGGAGATGTGTGCCTACCATAATGGGCAAAGGATACCGAATTGTCATGAACTTGATTTGCAGGGTTATTCTATGGAGCATGGGAGGGACTCAACAAGAGATAATAATGGATCTGAGGATGAAGATGAGAATAACAATGATAGCGAGGAGGATGAGTTGGATGATGACATTAATATTAATGCACACGAGGATGGAGGGAGGATGCAGGAACTCTGTGATAGAAATATATTAAGTGAGGAGGATGGCCATTTTGGCCCACAAGCTTCTCGGATGGACAAATTTGAGATTGAAATGGCAAGGGTTTTTCAAGACCCCACAAAGTCATTACGCGAACAAAGAGAGTGGATTAAAATCCAGATGTTGCAGCTTCAAGAGCAAAATATCAGCTACCAAGCCCAAACTCTTGAACTTGAGAAACAGCGGCTTAAGTGGTTAAGATATTGCAGCAAGAAGGACAGAGAACTGGAGAGGCTGAGATTGGAGAACAAAAGAATGAAGTTAGAAAACGAGCACAGGATCTTGAAACTGAAACAAAAAGAGCTAGAGGTAGATTTCAGTACATCTGAGATGTCTTTAGACCCTGCCTCTATAGGAATCAACCGGCCGCAGGGAAGGGAGCATGTCAGCTTAGGCAGACAACAGTAG 1347 0.4365 MNGSGLGGGFLSGPSGGILDLESSFHRHQQTQLGHPSITGQQQLNIMSGLESDHPIGLIEVKNLNAALNFGKGKAIAPSDSNELSDEDEPSYAEEGNCENLDGGKGKKGSPWQRMKWTDNVVRLLITVVSCVGDDGTIAGMDGHKRKSGVLQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTCCQVVENPALMDSIPNLSAKMKDDVRKILSSKHLFYKEMCAYHNGQRIPNCHELDLQGYSMEHGRDSTRDNNGSEDEDENNNDSEEDELDDDININAHEDGGRMQELCDRNILSEEDGHFGPQASRMDKFEIEMARVFQDPTKSLREQREWIKIQMLQLQEQNISYQAQTLELEKQRLKWLRYCSKKDRELERLRLENKRMKLENEHRILKLKQKELEVDFSTSEMSLDPASIGINRPQGREHVSLGRQQ* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1531 448 MobiDBLite consensus disorder prediction 274 288 - -
Pvu5g1531 448 Pfam Myb/SANT-like DNA-binding domain 114 239 IPR044822 -
Pvu5g1531 448 MobiDBLite consensus disorder prediction 426 448 - -
Pvu5g1531 448 MobiDBLite consensus disorder prediction 75 112 - -
Pvu5g1531 448 Gene3D - 117 189 - -
Pvu5g1531 448 Coils Coil 382 418 - -
Pvu5g1531 448 PANTHER F16F4.11 PROTEIN-RELATED 12 422 - -
Pvu5g1531 448 MobiDBLite consensus disorder prediction 260 288 - -
Pvu5g1531 448 PANTHER TRANSCRIPTION FACTOR TRIHELIX FAMILY-RELATED 12 422 - -
Pvu5g1531 448 Coils Coil 354 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1531 Pvu-Chr5 37591813 37594332 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu5g1531 Myb_DNA-bind_4 1.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1531 - - gmx:100798932 781.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1531 5 37591813 37594332 Pvu5g1531 5 37591813 37594332 ECH