Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1525 ATGGCGGCGGCGTCGCAGGGGTACCACCAGCCTTCGACAATCGAGGAAGTGAGAACCCTATGGATTGGGGATTTGCAGTATTGGGTGGACGAGGCGTACCTCAGCCACTGTTTCGCCCACACCGGCGAGGTCCTCTCCATCAAAATCATCCGCAACAAGATGACGGGGCAACCCGAGGGTTACGGTTTCGTCGAGTTTGTTTCCCACGCGTCAGCGGAGCGCGTGCTCCAGACCTACAACGGCATGCAAATGCCCGGCACCGAACAGACCTTCAGGCTGAATTGGGCCTCCTTCGGCATCGGCGAGCGCAGGCCCGATGCGGGCCCAGAGCACTCAATCTTTGTGGGCGATCTTGCGCCGGAGGTAACCGACTACCTTCTCCAAGAAACCTTCCGGGCCCATTACCCCTCCGTTCGCGGCGCCAAGGTCGTCACGGATCCCAACACGGGCCGCTCCAAGGGCTACGGCTTCGTCAAATTCTCCGACGAGAGCGAACGCAACCGCGCCATGACCGAGATGAACGGGGTTTATTGCTCCACCAGAGCCATGCGCATTAGCGCCGCCACGCCCAAGAAGACCACCGCTTCTTACGCCGCGCCCGCGCCTGTACCCAAACCGACGTACCAGATGCCGGCGTACACTGCGCCGGTTCAAGTTCAACAACCGGAGTATGATGCTAATAACACTACCGTTTTTGTTGGTAGTTTAGATCTTAATGTGTCTGAGGAGGAATTGAAGCAAAACTTTCTGCAATTTGGGGAAATTGTCTCTGTTAAAATTCAGGCTGGCAAGGGATGTGGCTTTGTTCAATTTGGGACTAGAGCATCTGCTGAGGAAGCTATTCAGAAAATGCAGGGAAAGATGATAGGCCAACAAGTGGTCAGGATTTCTTGGGGTAGGACTCTAGCAGCTAGACAGGACTTACCTGGTGGCTGGGGACAACAGATGGATCAAAGTCAATGGAGTGCCTACTATGGGTATGGACAGGGTTATGAAGCATATGCTTATGGGGCTGCTCAAGACCCTTCATCTTATGGATATGGTGCATATGCTGGCTATGCACAATATCCCCAACAGGTTGAAGGTGTGCAAGACCCAACGGCTATGTCTGTGCCTACCATGGAACAAAGGGAGGAATTGTATGATCCATTGGCAATGCCAGATGTTGACAAGTTAAATGCTGCATACCTCTCAGTACATGGCAATGCCATTTTAGGGCGATCGCTATGGCAAAAATCCTGTTCATCATCATCATCATCCTTACAACAAAATTAA 1275 0.5286 MAAASQGYHQPSTIEEVRTLWIGDLQYWVDEAYLSHCFAHTGEVLSIKIIRNKMTGQPEGYGFVEFVSHASAERVLQTYNGMQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPEVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMTEMNGVYCSTRAMRISAATPKKTTASYAAPAPVPKPTYQMPAYTAPVQVQQPEYDANNTTVFVGSLDLNVSEEELKQNFLQFGEIVSVKIQAGKGCGFVQFGTRASAEEAIQKMQGKMIGQQVVRISWGRTLAARQDLPGGWGQQMDQSQWSAYYGYGQGYEAYAYGAAQDPSSYGYGAYAGYAQYPQQVEGVQDPTAMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWQKSCSSSSSSLQQN* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1525 424 CDD RRM1_SECp43_like 19 99 - -
Pvu5g1525 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 301 IPR000504 GO:0003723
Pvu5g1525 424 CDD RRM3_NGR1_NAM8_like 228 299 - -
Pvu5g1525 424 Gene3D - 17 97 IPR012677 -
Pvu5g1525 424 SMART rrm1_1 112 186 IPR000504 GO:0003723
Pvu5g1525 424 SMART rrm1_1 230 297 IPR000504 GO:0003723
Pvu5g1525 424 SMART rrm1_1 19 94 IPR000504 GO:0003723
Pvu5g1525 424 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 9 359 - -
Pvu5g1525 424 Gene3D - 99 199 IPR012677 -
Pvu5g1525 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 98 IPR000504 GO:0003723
Pvu5g1525 424 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 190 IPR000504 GO:0003723
Pvu5g1525 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 177 IPR000504 GO:0003723
Pvu5g1525 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 88 IPR000504 GO:0003723
Pvu5g1525 424 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 294 IPR000504 GO:0003723
Pvu5g1525 424 CDD RRM2_SECp43_like 110 189 - -
Pvu5g1525 424 SUPERFAMILY RNA-binding domain, RBD 207 330 IPR035979 GO:0003676
Pvu5g1525 424 Gene3D - 213 306 IPR012677 -
Pvu5g1525 424 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 9 359 - -
Pvu5g1525 424 SUPERFAMILY RNA-binding domain, RBD 17 191 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1525 Pvu-Chr5 37546104 37549185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1525 17 306 Eukaryotic Initiation Factors Gene Family AT2G23350 26.821 8.00e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1525 - - gmx:100799421 712.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1525 5 37546104 37549185 Pvu5g1525 5 37546104 37549185 ECH
Pvu5g1525 5 37546104 37549185 Pvu11g0610 11 5157029 5160520 PCT