Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1524 ATGGCTGCAACTCCTTCCAAATCCATATTCCGATCCCAATCCAATGCTAAATCCTCGCCTGTTGTAACCCCACACACTCCACAAACCCTACATCTGCGCCGATCCCCACGCGCCAAGTCCCTTCTCTTCGATTCTCCCAAATCTTCCAACTCACCTTCTGAAATCCCCCTCACAACTCCCAAGCGGAGAACTCAACGAATCAACGATTACGTCGGACATGATTCTGGCAATGTCAGAGTCGCCGCTAAAGATTCCGCGAAGAAGAAAAATGTTGTATCCAAGGAACAGAATAGGAAGAGCTCAATTGAATTTTCTCACGCTCCGGTGACGCCGGCTTCCTCGGAGAAGAGCTCAAGGAGGAAGAGGAAAGGTGAGAGGAGTGTGGTTACCAGAGCTAAAAGGGCAAAATTGGAAATTTCAAAACGGAGTTCAAAGTTGCCTGCGAGGCGCGTGTATTACAAAAAAGTTATTTTTGATGGAGGAGAGTTTGAAGTGGGGGGTGACGTTTACGTCAAGAGGAGAGAAGATGCTACCTCCGACGATGAAGATCCCGAAGTTGAGCTGTGTAGGATGTGTTTCTTGACAAACAATGAGATCATGATTGAGTGTGACGATTGTTTGGGTGGGTTTCACTTGAAATGTTTGAGACCTCCATTGAAGGATGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGGAGGATCGGTAAGGAGGTTAATCGTCCAAAGCCTCCCGTGGGTAAGAAACTGGTTAGATCTATGAGGGAGAAATTACTTTCCAGTGATTTGTGGGCTGCTCATATTGAAAGCATATGGAAAGAGGTAGACGGCAACTATTGGTGTCGGGTGCGGTGGTATACTATCCCCGAAGAGACTTCTGTTGGGAGGCAGCCACATAACCTGAGAAGGGAGCTATACCGAACAAATGACTTTGCTGACATTGAGATGGAATCTGTCCTTAGGCATTGCTATGTTATGGCCCCTAAAGAATATGCTAAAGCTAGCAATGAGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCAATTGGCATAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGAAGCGACTGACAGTGATGAAGACTGGAGCCTTGACAAGGAGTCAGACTCTGATACAGATGAAGATGTTGGATATGAAGAAGAAAATATTAAAGATGGACTATCTCAGCCATCAAAAGGCCACCACTTAGCTGCAAATCTTCACAAGGGACGGTTCTTCGGACTTCAGAAGATAGGCACAAAAAGAATTCCACAGCATGTAAGGTCTCACAAGCAGACGGATCTTGAGAGAGCAAAGTCTACACTGTTGTTAGCATCACTGCCTAAATCTTTACCATGTAGAAATAAAGAAATGGAGGAGATAACTACATTCGTCAAAGGTGCTATTTCTGATGATCAATGTCTGGGGGGTTGCCTCTACATTCATGGAGTTCCGGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAGGAGTTTGAAGTCAGAAGTTGATGCAGGAAATATCAAACCATACACCTTTGTGGAGATTAATGGTTTGAAGTTGGCATCACCAGAGAATATTTATCGGGTCATATACGAGGCACTTAATGGACACAGGGTCAGCTGGAAAAAGGCTCTCCACTTGTTGAATGAGCGATTTGTAGAAGGGAAGAAAATCAGAGATGAGGCTGACCGACCATGTATTTTGCTTATTGATGAACTCGATCTTCTTGTAACCAGAAACCAATCGGTTCTGTATAATATTCTTGACTGGCCCACTAAGCCACATTCCAAACTAATAGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGCATATCAAGCCGAATGGGAATTCAGAGGCTTTGCTTTGGCCCATATAATTATCACCAGCTTCAAGAAATCATTTCAAGTCGCCTCATGGGAATTGATGTTTTTGAAAAGCAAGCTGTAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCGGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCAGCTGAAATTGCAGATTATCGAATGAAGAAGTTAATTCCTAATCCTGATCTCGTCACTGCAGGAAAGGGACTTGTTGGAATGGTAGATGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAATGATGAAAAGCTGTTCCAGATTAAGCAAAATTTTCCTGACAGCTATGGTACACGAGCTTTATAATACTGGAATGGGAGAAACTACTTTTGAAAAGTTGGCAATGAGGGTTTCATGCCTATGTATCAGCAATGGAGAAGTTTTTCCTGGATATGATACTCTGCTGCAAGTTGGCTGCAAGCTAGGTGAATGCAGAATTATTTTATGTGAAGCAGGTTCCAAGCACAAGTTGCAAAAATTGCAGCTTAATTTCCCGAGTGATGATGTGACCTTTGCGCTGAGAGACTGCAAAGATCTACCTTGGCTATCAAAGTATCTAATGTAG 2529 0.4338 MAATPSKSIFRSQSNAKSSPVVTPHTPQTLHLRRSPRAKSLLFDSPKSSNSPSEIPLTTPKRRTQRINDYVGHDSGNVRVAAKDSAKKKNVVSKEQNRKSSIEFSHAPVTPASSEKSSRRKRKGERSVVTRAKRAKLEISKRSSKLPARRVYYKKVIFDGGEFEVGGDVYVKRREDATSDDEDPEVELCRMCFLTNNEIMIECDDCLGGFHLKCLRPPLKDVPEGDWICGFCEARRIGKEVNRPKPPVGKKLVRSMREKLLSSDLWAAHIESIWKEVDGNYWCRVRWYTIPEETSVGRQPHNLRRELYRTNDFADIEMESVLRHCYVMAPKEYAKASNEGDDVFLCEYEYDINWHSFKRLADIDNERENGEATDSDEDWSLDKESDSDTDEDVGYEEENIKDGLSQPSKGHHLAANLHKGRFFGLQKIGTKRIPQHVRSHKQTDLERAKSTLLLASLPKSLPCRNKEMEEITTFVKGAISDDQCLGGCLYIHGVPGTGKTMSVLSVMRSLKSEVDAGNIKPYTFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKIRDEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYHQLQEIISSRLMGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRMKKLIPNPDLVTAGKGLVGMVDVEAAIQEMFQAPHIQMMKSCSRLSKIFLTAMVHELYNTGMGETTFEKLAMRVSCLCISNGEVFPGYDTLLQVGCKLGECRIILCEAGSKHKLQKLQLNFPSDDVTFALRDCKDLPWLSKYLM* 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1524 842 Pfam PHD-finger 189 234 IPR019787 -
Pvu5g1524 842 MobiDBLite consensus disorder prediction 1 131 - -
Pvu5g1524 842 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 121 837 - -
Pvu5g1524 842 Gene3D - 441 638 IPR027417 -
Pvu5g1524 842 SMART BAH_4 220 361 IPR001025 GO:0003682
Pvu5g1524 842 Gene3D - 639 717 - -
Pvu5g1524 842 Gene3D - 130 377 IPR043151 -
Pvu5g1524 842 Pfam ATPase family associated with various cellular activities (AAA) 490 635 IPR003959 GO:0005524|GO:0016887
Pvu5g1524 842 ProSiteProfiles Zinc finger PHD-type profile. 186 235 IPR019787 -
Pvu5g1524 842 Pfam AAA lid domain 663 696 IPR041083 -
Pvu5g1524 842 ProSitePatterns Zinc finger PHD-type signature. 189 232 IPR019786 -
Pvu5g1524 842 SMART PHD_3 188 233 IPR001965 -
Pvu5g1524 842 SMART AAA_5 485 639 IPR003593 -
Pvu5g1524 842 MobiDBLite consensus disorder prediction 80 101 - -
Pvu5g1524 842 MobiDBLite consensus disorder prediction 1 30 - -
Pvu5g1524 842 Pfam BAH domain 269 359 IPR001025 GO:0003682
Pvu5g1524 842 ProSiteProfiles BAH domain profile. 244 361 IPR001025 GO:0003682
Pvu5g1524 842 MobiDBLite consensus disorder prediction 42 65 - -
Pvu5g1524 842 MobiDBLite consensus disorder prediction 367 409 - -
Pvu5g1524 842 SUPERFAMILY FYVE/PHD zinc finger 176 238 IPR011011 -
Pvu5g1524 842 MobiDBLite consensus disorder prediction 369 397 - -
Pvu5g1524 842 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 1 121 837 IPR020793 -
Pvu5g1524 842 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 250 IPR013083 -
Pvu5g1524 842 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 455 703 IPR027417 -
Pvu5g1524 842 CDD AAA 466 642 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1524 4 841 Core DNA Replication Machinery Family AT4G14700 61.792 0.0 1017
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu5g1524 AAA 2.8e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1524 K02603 - gmx:100798547 1460.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1524 5 37538524 37544412 Pvu5g1524 5 37538524 37544412 ECH