Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1522 ATGAGGAAGCCAGAAGGGTGCAGTGGTAAAGAGAACAAGTTCAGAAAGGGGTTGTGGTCACCAGAAGAAGATGAGAAACTGATGAAGTACATGGTAAACAGTGGACAAGGATGTTGGAGCGATGTGGCAAGAAATGCTGGTCTCCAAAGGTGTGGGAAAAGTTGTCGGCTACGATGGATCAATTACTTGAGGCCTGATCTTAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTCCATTCCTTTCTTGGAAACAGATGGTCTCAAATTGCGGCGCGATTGCCTGGGAGAACCGACAATGAGATAAAAAACTTTTGGAATTCAACGATAAAGAAAAGACTCAAGAACATGTCGTCTGCAACCACAGGTTCAACCTCAACAAATGCTAGTGAGACCTCATCTGAACCATGTAAAGACCCCAAAACAGGAGGGTTTGTGCCTACACAACATCATCAGCATGCAAGCTATGTGCATGTGTTTGGTTCATCTCCATCACAGTCAATTCAAACCACAGCTCTGAATACAATGATTGAAAGGTTGCCTATGTTGGATCATGGACTAAACATTGGGCCATGGTTTTCTCAAAGTGAAGTTGAGAAAGGTTGTTATTTAGAAAACCAAGTGTTTGGGAGTGTGGATATTGGGGTTGAGGGGGATATGTTTGATCCTCCCCTTGAGAATCTAAACACCAGTATCAATCATAACCTGAGTAAGAAAGAAACTAACAGCAGTTACTTTGATGACTTAAATAGTATCCTTAACAACTGCAACATTGGCATAACCAGTGAAAATAAGGAAGGGGTGGAGAATTTGTTTCAGCAAGAGTTAGCAACGGCAGAATGGGATTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTCCCTTTGTTGATTTTTCATTCTGA 915 0.4219 MRKPEGCSGKENKFRKGLWSPEEDEKLMKYMVNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSFLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSATTGSTSTNASETSSEPCKDPKTGGFVPTQHHQHASYVHVFGSSPSQSIQTTALNTMIERLPMLDHGLNIGPWFSQSEVEKGCYLENQVFGSVDIGVEGDMFDPPLENLNTSINHNLSKKETNSSYFDDLNSILNNCNIGITSENKEGVENLFQQELATAEWDFEELMKDVSSFPFVDFSF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1522 304 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Pvu5g1522 304 MobiDBLite consensus disorder prediction 120 141 - -
Pvu5g1522 304 PANTHER MYB DOMAIN PROTEIN 55 10 303 - -
Pvu5g1522 304 CDD SANT 71 111 IPR001005 -
Pvu5g1522 304 Gene3D - 16 68 - -
Pvu5g1522 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Pvu5g1522 304 SMART sant 15 65 IPR001005 -
Pvu5g1522 304 SMART sant 68 116 IPR001005 -
Pvu5g1522 304 MobiDBLite consensus disorder prediction 120 144 - -
Pvu5g1522 304 Gene3D - 70 143 - -
Pvu5g1522 304 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Pvu5g1522 304 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Pvu5g1522 304 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Pvu5g1522 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Pvu5g1522 304 CDD SANT 19 63 IPR001005 -
Pvu5g1522 304 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Pvu5g1522 304 PANTHER MYB TRANSCRIPTION FACTOR 10 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1522 Pvu-Chr5 37514783 37517736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1522 1 299 MYB Transcription Factor Family AT5G12870 45.079 1.77e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu5g1522 Myb_DNA-binding 2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1522 K09422 - gmx:100799410 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1522 5 37514783 37517736 Pvu11g0615 11 5205325 5207669 PCT