Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1508 ATGAGCTCCGACGCCACGTCGTATTGGTGTTACAGCTGCACGCGCTTCGTTCACATCCAGGAACACCACGACGTCGTTTGCCCGCGCTGCCAGGGCGGGTTCGTCGAGAAGGTCCAGGCCGGCCACTCGCCGGCAGTCTCTCTCATCGCTGACGGCGCGTCTAGAAGGCAGGGTTTCCGCCGCCGCCGCCGCAACGCTGGGAGTCACTCGCCGTTCAACCCGGTCATCGTGCTCCGGGGGCCGGGGGAGGACGAGGAGAGCAGTTTTGAGTTATACTACGACGGCGACGACGGCGCGGGGCTCCGGCCACTGCCCTCGACGATGTCGGAGTTTTTGCTCGGATCGGGGTTCGATCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGCTTCGGGAGGGCGGAGAATCCGCCGGCGTCAAAGGCGGCGATAGAGTCAATGCCGACGGTGCAAATCACTGAGTCTCAGGTCGTGACAGAGACGCACTGCGCCGTGTGCAAAGAGCCCTTCGAGCTGGGCGCGCTGGCGCGTGAGATGCCGTGCAAGCACCTCTACCACTCCGATTGCATTCTCCCGTGGCTCTCGATGCGAAACTCGTGCCCGGTGTGCCGCCACGAGTTACCGTCGGAGCAAGCGCCGTCGGAGAGCAGAGTTGCCGGGCAGATCGAGGAGGAAGCGGTGGGGTTGACCATATGGAGGCTGCCCGGCGGCGGATTCGCCGTGGGTAGGTTCGCTGGCGAGAGCCACTTGCCGGTGGTGTACACGGAGATGGAGAGTGGTGGAAATTCGAGCGAAGGTTCTAGAAGAATTTCTCTGTCGGTTGGAAGCGCGAGAGTTAGGGAAAGTCGTGGTGGATTTGGCAGAATGTTCCGGAATTGGTTTGGCAGAATTGGGGCTTTAACTAGAAGTCGCAGCCTTTCAACTTCGCTCTTCAGTAGGAGACGAAGTAGCACGAGAACCTGA 966 0.6118 MSSDATSYWCYSCTRFVHIQEHHDVVCPRCQGGFVEKVQAGHSPAVSLIADGASRRQGFRRRRRNAGSHSPFNPVIVLRGPGEDEESSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFGRAENPPASKAAIESMPTVQITESQVVTETHCAVCKEPFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQAPSESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMESGGNSSEGSRRISLSVGSARVRESRGGFGRMFRNWFGRIGALTRSRSLSTSLFSRRRSSTRT* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1508 321 SMART ring_2 164 204 IPR001841 -
Pvu5g1508 321 Pfam Ring finger domain 163 205 IPR001841 -
Pvu5g1508 321 Pfam Protein of unknown function (DUF1117) 228 316 IPR010543 -
Pvu5g1508 321 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Pvu5g1508 321 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Pvu5g1508 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 211 IPR013083 -
Pvu5g1508 321 CDD RING-H2_RNF126_like 164 205 - -
Pvu5g1508 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 4 284 - -
Pvu5g1508 321 SUPERFAMILY RING/U-box 144 210 - -
Pvu5g1508 321 PANTHER OS05G0110000 PROTEIN 4 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1508 Pvu-Chr5 37437248 37439200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1508 93 216 C3H Transcription Factor Family AT5G01980 40.323 2.05e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1508 - K11982 vun:114185595 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1508 5 37437248 37439200 Pvu11g0641 11 5425290 5427120 PCT