Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1489 ATGGGTGTTTGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCGTATAATACTGGGTTGAATTCAAAGTATGGGAGTACAGATGGAAATTATCTTGGCAGCACAAACGATAAGGTTTCAGGGAACTCAGTCCCTCAGACTCCTCGGAGTGAGGGTGAGATCTTGCAGTCATCCAATTTGAAGAGCTTCACCTTATCAGAACTTAAGACGGCCACTAGGAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAAGGGTGGATTGATGAGAATTCATTGACTGCTACAAAACCAGGCACTGGCATTGTTATTGCTGTGAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAATTACCTTGGACAACTTTCTCATCCTCATCTGGTGAGATTGATTGGGTTTTGCCTTGAAGATGAACACCGCCTTCTCGTCTATGAATTCATGCCTCGCGGAAGCTTGGAAAACCATTTGTTCAGGAGAGGCTCATATTTTCAGCCACTTTCTTGGAGCCTCCGTTTGAAAGTTGCTCTTGATGCTGCCAGAGGGCTTGCCTTTCTACACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAGACTTCAAATATTTTGCTGGATTCAAATTACAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGATGGACCAACGGGTGACAAAAGTCATGTCTCCACCAGGGTAATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTCACGTCCAAGAGTGATGTCTATAGTTTTGGAGTTGTCTTGCTGGAAATGTTATCTGGAAAGAGAGCAGTTGACAAGAACAGACCATCTGGACAACACAGTTTGGTGGAATGGGGTAAACCATTTCTAGCAAACAAACGTAAGATATTTCGTGTGTTAGACACCCGGCTTGAAGGACAATATTCAACGGATGATGCCTATAAGGTAGCCAACCTTGCCTTGCGGTGCCTGTCAATAGATTCCAAGTTCAGGCCAAACATGGATGAAGTGGTTACAACATTGGAGCAGCTGCAGGTTCCTAATGCAAATGAAGGCAATCAAAATCTTTGTCGCGTTCGAAGAAGAAGTGCTGATGTAAGTAGAGGCTATCAAAATCCTTCTGTTAATGGATCTCGAGCTCGTAGAAGAAGTGCTGATGACTTTAGCCGCATGGAGACTCCCTCAACTTATCCCAGGCCCTCTGCATCCCCTCTCTATACTTGA 1269 0.4421 MGVCLSAQIKAESPYNTGLNSKYGSTDGNYLGSTNDKVSGNSVPQTPRSEGEILQSSNLKSFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWSLRLKVALDAARGLAFLHSAETKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTSKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHSLVEWGKPFLANKRKIFRVLDTRLEGQYSTDDAYKVANLALRCLSIDSKFRPNMDEVVTTLEQLQVPNANEGNQNLCRVRRRSADVSRGYQNPSVNGSRARRRSADDFSRMETPSTYPRPSASPLYT* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1489 422 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Pvu5g1489 422 MobiDBLite consensus disorder prediction 367 422 - -
Pvu5g1489 422 Gene3D Transferase(Phosphotransferase) domain 1 160 380 - -
Pvu5g1489 422 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Pvu5g1489 422 CDD STKc_IRAK 80 359 - -
Pvu5g1489 422 SUPERFAMILY Protein kinase-like (PK-like) 48 356 IPR011009 -
Pvu5g1489 422 MobiDBLite consensus disorder prediction 30 54 - -
Pvu5g1489 422 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Pvu5g1489 422 PANTHER OS01G0588500 PROTEIN-RELATED 26 371 - -
Pvu5g1489 422 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 26 371 - -
Pvu5g1489 422 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1489 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Pvu5g1489 422 MobiDBLite consensus disorder prediction 405 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1489 Pvu-Chr5 37281721 37284611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1489 27 356 Glycoside Hydrolase AT3G07070 45.748 9.97e-103 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pvu5g1489 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1489 - - gmx:100798404 777.319
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1489 5 37281721 37284611 Pvu11g0657 11 5553152 5556618 PCT