Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1469 ATGTCTGCTGCTCTGGATATGACGCTCGACGATATTATAAAAAACAACAAGAAGTCAGCCTCCGCCAACACCAGGGGCCGAGGCCGAGCTTCGGGACCCGGACCTGCTCGTCGTCTTCCCAACCGTGCCGGAAATCGTCCTGCGCCGTACGCAGCAGCTAAGGCGCCGGAGTCTGCGTGGCAGCACGATATGTACGCCGATCAGGGCGTCGCCACGGCTTTCGCAGGTCAAGGTGGTCGGGCCTCTTCCATCGAAACAGGGACGAAGCTTTATATATCTAATCTGGATTATGGGGTTTCCAATGACGATATTAAGGAGTTATTTCTTGAAGTTGGTGACCTGAAACGGCACACTGTTCACTACGACAGGAGTGGAAGATCGAAGGGTACAGCGGAAGTAGTTTTCTCTCGAAGAGCTGATGCTGTAGCTGCAGTGAAGAGGTATCACAATGTTCAGCTAGATGGGAAACCAATGAAGGTAGAGATCGTGGGGACAAATATTGCTACACATGCTGCAGTACCTCCTGTTAATGGAACTTTTGGAAATTCTGGAGGACCTCCCAGAAGTGGACAAGGGAGAAGTGGGCTACTAGGAAGGCCACGTGGTGCACCTAGAGGGCGAGGTAGCAGTCGGAGGGGTCGAGGAGGACGTGGTAGAGATCGTGATGAAAAGGTATCTGCTGAAGATCTTGATGCTGAGTTGGAGAAGTATCATGCTGAGGCTATGCAATTGAACTGA 738 0.5176 MSAALDMTLDDIIKNNKKSASANTRGRGRASGPGPARRLPNRAGNRPAPYAAAKAPESAWQHDMYADQGVATAFAGQGGRASSIETGTKLYISNLDYGVSNDDIKELFLEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYHNVQLDGKPMKVEIVGTNIATHAAVPPVNGTFGNSGGPPRSGQGRSGLLGRPRGAPRGRGSSRRGRGGRGRDRDEKVSAEDLDAELEKYHAEAMQLN* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1469 245 Gene3D - 75 228 IPR012677 -
Pvu5g1469 245 SMART rrm1_1 89 161 IPR000504 GO:0003723
Pvu5g1469 245 MobiDBLite consensus disorder prediction 213 231 - -
Pvu5g1469 245 MobiDBLite consensus disorder prediction 16 50 - -
Pvu5g1469 245 Coils Coil 227 245 - -
Pvu5g1469 245 SUPERFAMILY RNA-binding domain, RBD 83 194 IPR035979 GO:0003676
Pvu5g1469 245 SMART FoP_duplication_2 176 245 IPR025715 -
Pvu5g1469 245 MobiDBLite consensus disorder prediction 172 231 - -
Pvu5g1469 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 165 IPR000504 GO:0003723
Pvu5g1469 245 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 244 - -
Pvu5g1469 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Pvu5g1469 245 Pfam C-terminal duplication domain of Friend of PRMT1 182 239 IPR025715 -
Pvu5g1469 245 CDD RRM_THOC4 88 162 - -
Pvu5g1469 245 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1469 Pvu-Chr5 37113698 37117710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1469 67 162 Eukaryotic Initiation Factors Gene Family AT2G36660 27.083 1.25e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1469 K12881 - gmx:100783362 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1469 5 37113698 37117710 Pvu11g0677 11 5733428 5737665 PCT