Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1464 ATGGGGCGAAATCTCTTTGTCTCGAGATTGTCCTTTTACACTACACAGGACCAGCTGAAGAAGTTGTTCGCTCCATTCGGACTAGTTACCAGTGTTAATCTCGTGGTCGATCCTAGAACTAAAAGGCCCAAAGGGTTTGCGTTTGTCTCCTACGAGTCTCAAATTGAAGCGGAAAAGGCTATGAGAGCCATGAATGGCAGGATTGTTGATGGAAGGCTGATTTTTGTTGAACCTGCGAACGAGAAATGA 249 0.4538 MGRNLFVSRLSFYTTQDQLKKLFAPFGLVTSVNLVVDPRTKRPKGFAFVSYESQIEAEKAMRAMNGRIVDGRLIFVEPANEK* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1464 82 SUPERFAMILY RNA-binding domain, RBD 3 81 IPR035979 GO:0003676
Pvu5g1464 82 Gene3D - 1 82 IPR012677 -
Pvu5g1464 82 SMART rrm1_1 4 77 IPR000504 GO:0003723
Pvu5g1464 82 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 81 IPR000504 GO:0003723
Pvu5g1464 82 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 74 IPR000504 GO:0003723
Pvu5g1464 82 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1464 Pvu-Chr5 37089184 37091068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1464 2 82 Eukaryotic Initiation Factors Gene Family AT2G23350 37.037 1.56e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1464 K13195 - gmx:100781760 128.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1464 5 37089184 37091068 Pvu5g1464 5 37089184 37091068 ECH