Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1462 ATGAAGAGAAGCAGAGAAGAGGGTGAGTTAGAGAACATGACTAACTGTTTGATGCTGTTGACCAAAGTTGGTGTGAGTGAAACCAACCCTACATCAAAGGGCTGTGGAGAGTTAAGGGACAGTGATGTTGGTGATTTCAAGTGCAAAACTTGCAATCGAAGGTTTTCTTCTTTTCAAGCACTTGGTGGACACAGAGCTAGTCACAAGAAACCAAGGCTTATGATCACAGATCTTTCGTGCCACCATCACACGTTACCTAGTCCAGTCACGAAACAGCAACCTAGGATGCACCCTTGTCCCATTTGTGGGCTTGAGTTTGCCATTGGACAAGCCCTGGGAGGGCACATGAGAAAGCATAGAACTGCCATTAATGGCGGTTTGTTGAATCGTAGAGATTCGGATTCTTTGTCCATTCTCAAGAAATCTAAAGATGGTGGAAAGTTGAATCTGTGTTTGGACTTGAACTTGATGCCATTGGAGGATGATGATCTTAAGCTCAACCTAAGAACACCCGTTCTCAATTGTTTCATTTGA 534 0.4382 MKRSREEGELENMTNCLMLLTKVGVSETNPTSKGCGELRDSDVGDFKCKTCNRRFSSFQALGGHRASHKKPRLMITDLSCHHHTLPSPVTKQQPRMHPCPICGLEFAIGQALGGHMRKHRTAINGGLLNRRDSDSLSILKKSKDGGKLNLCLDLNLMPLEDDDLKLNLRTPVLNCFI* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1462 177 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Pvu5g1462 177 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Pvu5g1462 177 SUPERFAMILY beta-beta-alpha zinc fingers 46 119 IPR036236 -
Pvu5g1462 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Pvu5g1462 177 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 5 175 - -
Pvu5g1462 177 Gene3D Classic Zinc Finger 43 119 - -
Pvu5g1462 177 PANTHER ZINC FINGER PROTEIN ZAT5 5 175 - -
Pvu5g1462 177 Pfam C2H2-type zinc finger 97 121 - -
Pvu5g1462 177 Pfam C2H2-type zinc finger 46 71 - -
Pvu5g1462 177 SMART c2h2final6 97 119 IPR013087 -
Pvu5g1462 177 SMART c2h2final6 46 68 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1462 Pvu-Chr5 37075049 37075817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1462 1 168 C2H2 Transcription Factor Family AT2G28710 48.538 1.22e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g1462 zf-C2H2_6 3.6e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1462 - - vra:106758971 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1462 5 37075049 37075817 Pvu11g0685 11 5792300 5792719 PCT