Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1459 ATGGTTCAACAGGAAGTGCGTAAAGGTCCATGGACAGAACAGGAAGACTTCAAATTGGTGTCGTTTGTTGGTTTGTTTGGAGACCGTAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAATAGAACAGGTAAAAGTTGCAGATTACGGTGGGTTAATTACCTTCATCCTGGTCTCAAACGTGGAAAGATGACACCCCAGGAAGAACGCCTTGTGCTCGAGCTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGCAAGTTACCAGGGCGCACTGACAATGAGATTAAGAATTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGACAAAAAGAGAGGAGAAGCTGCTTCATTCACACCGACACCTTCTTCAAGTGTTCATTCCTCAATATCAGTATCCTCAAAGAAACATGCAGTGGAACCACATGGTTCAAAGAAGGCAGGAGAAGAGAGCTTTTATGACACTGGAGGTCCTAGTGTGATAGGATCAAGCCAAGATGAAGGTGAAGGTGAGTTCTCTATGGATGATATATGGAAAGACATTGACATGTCAGAAGAGAACAACAGTTTTCTTCATGGGAACGGTGAAGTGGTTTCTCCATCTCCATCATCATGGGAGTATTGTTCTTGTGAGCCTCTGTGGGTGATGGATGAGGAAAGTTTGTTTTGCCCCATGAGTGAGCCATATTTTTATGCATTAAGCGGTTAA 717 0.4365 MVQQEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQDKKRGEAASFTPTPSSSVHSSISVSSKKHAVEPHGSKKAGEESFYDTGGPSVIGSSQDEGEGEFSMDDIWKDIDMSEENNSFLHGNGEVVSPSPSSWEYCSCEPLWVMDEESLFCPMSEPYFYALSG* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1459 238 SMART sant 7 57 IPR001005 -
Pvu5g1459 238 SMART sant 60 108 IPR001005 -
Pvu5g1459 238 Gene3D - 8 60 - -
Pvu5g1459 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Pvu5g1459 238 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Pvu5g1459 238 CDD SANT 63 106 IPR001005 -
Pvu5g1459 238 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Pvu5g1459 238 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Pvu5g1459 238 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Pvu5g1459 238 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 227 - -
Pvu5g1459 238 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Pvu5g1459 238 CDD SANT 10 55 IPR001005 -
Pvu5g1459 238 MobiDBLite consensus disorder prediction 109 174 - -
Pvu5g1459 238 Gene3D - 63 122 - -
Pvu5g1459 238 MobiDBLite consensus disorder prediction 120 138 - -
Pvu5g1459 238 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 227 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pvu5g1459 238 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1459 Pvu-Chr5 37006420 37008178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1459 1 222 MYB Transcription Factor Family AT5G59780 59.307 2.77e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu5g1459 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1459 K09422 - gmx:100776886 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu11g0687 11 5815669 5817109 Pvu5g1459 5 37006420 37008178 PCT