Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1455 ATGGCTCCCAAAGCTGATAGTTCAAAGAAGGCTGATCCTAAGGCACAAGCCTTGAAAACTGCTAAAGCAGTTAAGTCAGGTGCTACCTTTAAGAAGAAGGCCAAAAAGACCCGAAATTCTGTTACCTTCCATCGGCCAAAGACTTTGAAAAAGGATAGGAGCCCCAAATACCCGCGCATTAGTGCTCCACCCAGGAATAAGCTTGATCACTATCAGATACTGAAGTATCCTCTCACAACTGAGTCCGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACCTGCGGGCTGACAAGAAGAAGATCAAGGATGCAGTGAAGAAAATGTATGATATTCAGGCCAAGAAAGTTAACACCTTGATCAGGCCTGATGGGACCAAGAAGGCTTATGTCAGGTTGACACCTGACTATGATGCCCTGGATGTGGCCAACAAGATTGGAATTATCTAA 462 0.4394 MAPKADSSKKADPKAQALKTAKAVKSGATFKKKAKKTRNSVTFHRPKTLKKDRSPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1455 153 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 70 146 IPR012678 GO:0003735|GO:0005840|GO:0006412
Pvu5g1455 153 ProSitePatterns Ribosomal protein L23 signature. 131 146 IPR001014 -
Pvu5g1455 153 MobiDBLite consensus disorder prediction 1 16 - -
Pvu5g1455 153 MobiDBLite consensus disorder prediction 26 44 - -
Pvu5g1455 153 MobiDBLite consensus disorder prediction 1 64 - -
Pvu5g1455 153 Pfam Ribosomal protein L23, N-terminal domain 14 63 IPR005633 -
Pvu5g1455 153 PANTHER 60S RIBOSOMAL PROTEIN L23A 1 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pvu5g1455 153 Hamap 50S ribosomal protein L23 [rplW]. 73 153 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pvu5g1455 153 Gene3D - 34 153 IPR012677 -
Pvu5g1455 153 Pfam Ribosomal protein L23 73 135 IPR013025 GO:0003735|GO:0005840|GO:0006412
Pvu5g1455 153 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 1 153 - -
Pvu5g1455 153 TIGRFAM uL23_arch: ribosomal protein uL23 77 153 IPR019985 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1455 Pvu-Chr5 36977102 36978624 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1455 1 153 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 86.364 2.36e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1455 K02893 - jre:109021970 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1455 5 36977102 36978624 Pvu11g0693 11 5856348 5858032 PCT