Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1436 ATGGAGCCGTCAGAAAAGTCGCCGAAAAAAGTATCATCAGTCAGATCATCATTTCCGAGAGATCCACGTGGCTCGCTCGAAGTGTTCAATCCAAACACTTCAACTGCAGCGAACTCGCGCGTGCGTTCACAGCCGCTTTGGAAATCGTACACGGAGTCGGAGGAATCGCGCGATGAAATCGCCGCCACGTCGTGGATGGCGATTAATCCGGCGCCGCAAGCAGAAGTGGAATGCGGCGCGGCGGCGCAGAGGGCTGCGGAGTGGGGGTTGGTGCTCCGAACCGACACCGAGACCGGCAGGCCGCAGGGCGTGGCGGCGAGGAACTCCGGCGGCGAGGAACCCAACGTTGCCAAACTTGCCGCCGCCGCTTCGTCTTCCAGGAAGAACTCTCAGAACTCCGCCAGAACCTCCGGCGACTCCTCCTCTGACGGCGGCGGCGACGTGGTGGGTGGAATTCCGAGAATTTCGGAGGACGTGATGGGGGCTTTGTCGGCTTTCCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTGCCCGATCCTGTATGCCAGTGCCGGGTTCTTTAAAATGACGGGTTATACGTCCAAGGAAGTTATTGGCAGAAACTGTCGGTTTTTACAGGGTGCAGAGACTGATTGTGGTGATGTGGCGAAGATAAGGGAAGCATTGGAAGCTGGGAAAATTTACTGCGGAAGGCTATTAAATTACAAGAAGGATGGGACACCTTTCTGGAACCTTCTCACCATTACACCCATTAAGGATGAAGATGGCAAGGTCCTCAAATTTATCGGAATGTTAGTGGAGGTTAGCAAGCACACGGAGGGGTTGAAGGAGAAGACTCTACGTCCCAATGGATTACCGGAATCCTTGATTCGATACGATGCACGCCAGAAAGAGAAGGCTACAAACTCAGTATCTGAGTTGTTGCAGATCATGAAGCGCCCCCGAGCACTGAGTGAATCCGCAGGCCGACCCTCCATTACAAAATCAGGATTTGCTGAGGAAGAAAAACAATCACTACATGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGAAAGAGAAAGCAAAAAGAACATTAAGAAGAAAATCCGAGAGTGAGGCTTCATTAGGACGCAAATCAGAAGGAGGAAAAAAATTTCCATGCAACGAATCAGTGAAGTTCAGGCGGAAAAGTGAGTCCAACGATGAAAGCATGGAAAATGATGTTATTGAGGATGTCAGCTCTGATAGTGAGGATGGTGAGAGGCCTGATAGTTTTGATGTAGATGACAAAGAAAAGCAGAGGGAAAAGAGAAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCAATAATCTTTGCATCGGATAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGGAATTGCAGGTTTCTACAAGGACCTGAAACTGATCCAGCAACAGTGAGAAAAATTAGAGAAGCAATTGACAACCAAACAGAAGTTACCGTGCAACTGATTAATTATACAAAGAGTGGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTAGATGGTAGTCAACATGTAGAGCCTCTTCAGAACGGCATCGCAGAAGATACTGCAAAGGAGGGAGAACAAATGGTCAAACAAACTGCAGAAAATGTTGATGTGGCAGTGAGAGATCTTCCGGATGCTAATATGGATAACCCTGCATGGAAAGCTATCCAGAAGGTCCTAGAAAGTGGAGAACAGATAAGCTTAAAGCACTTTAGGCCGATTAAACCTTTAGGATCAGGAGATACTGGCAGTGTGCATCTGGTGGAGCTACGTGGAACAGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTGCATAGAGTTTGCGCAGAGAGAGAAATTCTTGACCAGCTGGACCACCCTTTTCTACCTGCATTATATGCTTCGTTCCAGACCAAATCACACGTTTGTTTAATAACTGATTATTGTCCTGGCGGAGAATTATTCATGCTTCTTGACCAGCAACCAACTAAGGTTCTAAAGGAAGACGCCGCGAGATTTTATGCAGCTGAGGTAGTGATTGCATTGGAGTACCTTCACTGCCAAGGGATAATATATCGAGATTTGAAGCCTGAAAATGTGTTAATCCAAAGCAATGGGCATGTGTCCCTAACAGATTTTGATTTGTCATGTTTAACTTCTAGTAAACCACAGCTTATAATTCCAGCTTCCAATTCAAAGAAGAAGAAGAAGAAGAAACAGAGAAATCAGGAGGTTCCTGTGTTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACGGAAGAGTACATTGCTCCGGAAATTATAACTGGTTCTGGTCACACTAGTGCTGTTGATTGGTGGGCGCTAGGTATTCTTGTATATGAAATGTTTTATGGATATACTCCATTCCGGGGAAAGACAAGACAAAAAACGTTTGCTAATATTCTTCACAAGGATCTCAAATTTCCCAAAAGTAAACCAGTAAGTCTCCAGGGAAAGCAGCTGATTTATTGGTTATTGCAGAGAGATCCCAAAGAAAGATTGGGGTCACGTGAAGGAGCAAATGAAATTAAACGTCATCCTTTCTTCAAGGGTGTCAATTGGGCACTAGTTCGTTGCATGAAACCTCCTCAACTTGATGCTCCTCTCTTACCGAAAACTGAAGAAGAAAAAGAAGCCAAAGATATAGATCCTGGGCTAGAGGATTTGCAGACAAATGTTTTCTGA 2856 0.4555 MEPSEKSPKKVSSVRSSFPRDPRGSLEVFNPNTSTAANSRVRSQPLWKSYTESEESRDEIAATSWMAINPAPQAEVECGAAAQRAAEWGLVLRTDTETGRPQGVAARNSGGEEPNVAKLAAAASSSRKNSQNSARTSGDSSSDGGGDVVGGIPRISEDVMGALSAFQQTFVVSDATKPDCPILYASAGFFKMTGYTSKEVIGRNCRFLQGAETDCGDVAKIREALEAGKIYCGRLLNYKKDGTPFWNLLTITPIKDEDGKVLKFIGMLVEVSKHTEGLKEKTLRPNGLPESLIRYDARQKEKATNSVSELLQIMKRPRALSESAGRPSITKSGFAEEEKQSLHEEEEEEEEEEEKEKAKRTLRRKSESEASLGRKSEGGKKFPCNESVKFRRKSESNDESMENDVIEDVSSDSEDGERPDSFDVDDKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLQNGIAEDTAKEGEQMVKQTAENVDVAVRDLPDANMDNPAWKAIQKVLESGEQISLKHFRPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKGVMLNRNKVHRVCAEREILDQLDHPFLPALYASFQTKSHVCLITDYCPGGELFMLLDQQPTKVLKEDAARFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSSKPQLIIPASNSKKKKKKKQRNQEVPVFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILVYEMFYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKERLGSREGANEIKRHPFFKGVNWALVRCMKPPQLDAPLLPKTEEEKEAKDIDPGLEDLQTNVF* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1436 951 SMART serkin_6 616 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1436 951 SMART pas_2 157 226 IPR000014 -
Pvu5g1436 951 SMART pas_2 437 506 IPR000014 -
Pvu5g1436 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Pvu5g1436 951 MobiDBLite consensus disorder prediction 415 435 - -
Pvu5g1436 951 PANTHER FLIPPASE KINASE 1-RELATED 103 951 - -
Pvu5g1436 951 SMART pac_2 232 274 IPR001610 -
Pvu5g1436 951 SMART pac_2 512 554 IPR001610 -
Pvu5g1436 951 MobiDBLite consensus disorder prediction 354 400 - -
Pvu5g1436 951 Gene3D PAS domain 169 326 - -
Pvu5g1436 951 Pfam Protein kinase domain 618 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1436 951 MobiDBLite consensus disorder prediction 27 43 - -
Pvu5g1436 951 MobiDBLite consensus disorder prediction 318 435 - -
Pvu5g1436 951 SUPERFAMILY PYP-like sensor domain (PAS domain) 176 268 IPR035965 -
Pvu5g1436 951 Gene3D Transferase(Phosphotransferase) domain 1 700 929 - -
Pvu5g1436 951 Gene3D Phosphorylase Kinase; domain 1 615 939 - -
Pvu5g1436 951 ProSiteProfiles Protein kinase domain profile. 616 906 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1436 951 ProSiteProfiles PAS repeat profile. 435 508 IPR000014 -
Pvu5g1436 951 SUPERFAMILY PYP-like sensor domain (PAS domain) 451 550 IPR035965 -
Pvu5g1436 951 CDD PAS 182 271 IPR000014 -
Pvu5g1436 951 CDD PAS 450 550 IPR000014 -
Pvu5g1436 951 MobiDBLite consensus disorder prediction 1 43 - -
Pvu5g1436 951 Pfam PAS domain 176 272 IPR000014 -
Pvu5g1436 951 Pfam PAS domain 458 550 IPR000014 -
Pvu5g1436 951 ProSiteProfiles PAS repeat profile. 155 204 IPR000014 -
Pvu5g1436 951 Coils Coil 332 368 - -
Pvu5g1436 951 Gene3D PAS domain 423 588 - -
Pvu5g1436 951 SUPERFAMILY Protein kinase-like (PK-like) 600 926 IPR011009 -
Pvu5g1436 951 CDD STKc_phototropin_like 614 929 - -
Pvu5g1436 951 ProSitePatterns Protein kinases ATP-binding region signature. 622 645 IPR017441 GO:0005524
Pvu5g1436 951 PANTHER PHOTOTROPIN-1 103 951 - -
Pvu5g1436 951 MobiDBLite consensus disorder prediction 93 151 - -
Pvu5g1436 951 ProSiteProfiles PAC domain profile. 229 283 IPR000700 -
Pvu5g1436 951 TIGRFAM sensory_box: PAS domain S-box protein 182 275 IPR000014 -
Pvu5g1436 951 TIGRFAM sensory_box: PAS domain S-box protein 460 550 IPR000014 -
Pvu5g1436 951 ProSiteProfiles PAC domain profile. 509 563 IPR000700 -
Pvu5g1436 951 MobiDBLite consensus disorder prediction 122 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1436 Pvu-Chr5 36788090 36797906 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1436 1 951 AGC Kinase Gene Family AT3G45780 66.275 0.0 1268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Pvu5g1436 Pkinase 1.4e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1436 K20715 - gmx:100817565 1576.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1436 5 36788090 36797906 Pvu5g1436 5 36788090 36797906 ECH
Pvu5g1436 5 36788090 36797906 Pvu11g0721 11 6155537 6167237 PCT