Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1430 ATGTTGGATCTTAATCTGAATGCCGACTCGACTCAGAGCCATGACTCGGTGATGCTGTTGGACAAGTTTCCCGAAGCTTCTTCGGGAACTTCGAATTCCTCCGTGGTGAATGCGGAAGGGTCTAGCAACGAGGACTCGTGCTCCACACGCGCCGGTGGCGTGTTCACCTTTAATTTCGGAATTCTTAAGGTCGAAGGCGCGGAGGACGTCGTCGTCGCCGCGACGAAGGAGCTGTTTCCGGTGAGCGCGGATAATTGGCAAGGGCAGAGTTCGACGTCGTCGTTTCAGGCTAGGAAGAGTTTGATGGATCTCTCGCTGGATCGTCAAAACGGCGAGGTGAAGGTGGTTCAGGTTCAGCAACAATCTCAGGTGAAGAAGAGTAGGAGAGGTCCACGGTCTCGGAGCTCTCAGTACAGAGGAGTCACCTTCTACCGAAGGACGGGAAGATGGGAATCGCATATCTGGGATTGCGGGAAACAAGTCTATTTGGGTGGATTTGACACCGCTCATGCCGCAGCTAGGGCCTATGATCGAGCTGCAATTAAGTTCAGGGGACTTGATGCTGATATCAATTTTAATCTTGTTGATTATGAGGAGGATCTAAAACAGATGAAAAATCTTTCCAAGGAGGAGTTCGTGCACATACTGCGCCGCCACAGTACAGGTTTCTCAAGGGGTAGTTCAAAATACAGGGGAGTGACTCTTCACAAATGTGGCCGGTGGGAAGCTCGAATGGGACAATTCCTTGGAAAAAAGGCTTATGACAAGGCAGCTATCAAGTGCAATGGAAGGGAGGCAGTGACTAACTTCGAGCCAAGTGCATATGAGAGCGAAATGAAACCTGAAGCTATTAATGAAGGTGGCAGTCACGATCTTGATCTCAATCTGGGCATAGCAACTCCAGGACATGGTCCCAAAGAAAATCTGGGCCATCTTCAGTTCCAGCAAGTCCCTTACAGCACGCACCCCGGAAGAATTTCAAGGATGGAGACTAATGTTAATTCAGTTATTGGTGATCCTTCTTTGAAAAGGCACGCTGTAACTGAAGAGCGTCCTTCTGAATGGAATACCTCATATTCCACTTTCTTTCCCAATCTGGAAAGAGCAGAGAGAATCGGCATAGATCCTTCAAAAGGAGTCCCCAACTGGGCGTGGCAAACACATAGCCAGGTTTCCGCCACCCCAGTACCACCGTTCTCTACTGCAGCATCATCAGGATTCTCAATTTCAGCTACCTTTCCGCCAAATGCCATCTTTCCAACAAAATCATTGAACTCGATTCCGCAGAATCTCTGTTTCACTTCAGCCAGTGCACCAGGTAGCAATGCACCTCAATTCTATTACGAGGTCAAGCCCCTGCAGACACCATCCCAGCCTATCTAG 1383 0.4924 MLDLNLNADSTQSHDSVMLLDKFPEASSGTSNSSVVNAEGSSNEDSCSTRAGGVFTFNFGILKVEGAEDVVVAATKELFPVSADNWQGQSSTSSFQARKSLMDLSLDRQNGEVKVVQVQQQSQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGLDADINFNLVDYEEDLKQMKNLSKEEFVHILRRHSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKAYDKAAIKCNGREAVTNFEPSAYESEMKPEAINEGGSHDLDLNLGIATPGHGPKENLGHLQFQQVPYSTHPGRISRMETNVNSVIGDPSLKRHAVTEERPSEWNTSYSTFFPNLERAERIGIDPSKGVPNWAWQTHSQVSATPVPPFSTAASSGFSISATFPPNAIFPTKSLNSIPQNLCFTSASAPGSNAPQFYYEVKPLQTPSQPI* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1430 460 Gene3D AP2/ERF domain 228 272 IPR036955 GO:0003700|GO:0006355
Pvu5g1430 460 Gene3D AP2/ERF domain 136 195 IPR036955 GO:0003700|GO:0006355
Pvu5g1430 460 MobiDBLite consensus disorder prediction 26 47 - -
Pvu5g1430 460 Pfam AP2 domain 137 185 IPR001471 GO:0003700|GO:0006355
Pvu5g1430 460 CDD AP2 228 273 IPR001471 GO:0003700|GO:0006355
Pvu5g1430 460 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 445 - -
Pvu5g1430 460 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE2 1 445 - -
Pvu5g1430 460 CDD AP2 137 192 IPR001471 GO:0003700|GO:0006355
Pvu5g1430 460 SUPERFAMILY DNA-binding domain 136 193 IPR016177 GO:0003677
Pvu5g1430 460 SMART rav1_2 229 277 IPR001471 GO:0003700|GO:0006355
Pvu5g1430 460 SMART rav1_2 137 199 IPR001471 GO:0003700|GO:0006355
Pvu5g1430 460 ProSiteProfiles AP2/ERF domain profile. 137 193 IPR001471 GO:0003700|GO:0006355
Pvu5g1430 460 SUPERFAMILY DNA-binding domain 228 272 IPR016177 GO:0003677
Pvu5g1430 460 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1430 Pvu-Chr5 36714215 36718541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1430 1 417 AP2-EREBP Transcription Factor Family AT5G60120 48.366 4.91e-100 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu5g1430 AP2 2.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1430 K09284 - gmx:100796271 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1430 5 36714215 36718541 Pvu5g1430 5 36714215 36718541 ECH
Pvu5g1430 5 36714215 36718541 Pvu11g0729 11 6338128 6342324 PCT