Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1418 ATGGAGAGTGACACAAACACCACCCTTACTTCCTCTCCCACATTCTCTCACTCCTCTAACACCCTTTCTTCTTCTTCCCCTCCCCAACTTGTCATGACCCCTTGTGCTGCATGCAAAATCCTCAGGCGAAGATGTGCTGACAAATGTGTCTTGGCACCTTATTTCCCTCCCACCGAACCAGCCAAGTTCACCACTGCTCACCGTGTCTTCGGTGCCAGCAACATCATCAAGTTCTTACAGGAACTTCCAGAGTCTCAGAGAGCTGATGCAGTGGCGAGCATGGTTTACGAGGCTGGTGCAAGAATAAGAGACCCTGTATATGGATGTGCAGGTGCAATTTGCCAGCTCCAAAAGCAGGTCAATGAACTTCAAGCACAGTTAGCAAAGGCACAAGCTGAGGTTGTAACCATGCAATTACAGCAAGCCAATCTCGTGGCTCTAATTTGCATGGAAATGTCACAGACTCCACAGGAATCACCACAACAATCCCCGGACAATTTCATCACAAGTCCTTCCCACAACAGTGGATATCAGAACAATCTTAGTTTCTTTGAGGATAACACCAACCTAAACTCTATGTGGGAGCCTCTTTGGACATGA 600 0.4767 MESDTNTTLTSSPTFSHSSNTLSSSSPPQLVMTPCAACKILRRRCADKCVLAPYFPPTEPAKFTTAHRVFGASNIIKFLQELPESQRADAVASMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAEVVTMQLQQANLVALICMEMSQTPQESPQQSPDNFITSPSHNSGYQNNLSFFEDNTNLNSMWEPLWT* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1418 199 MobiDBLite consensus disorder prediction 1 27 - -
Pvu5g1418 199 Pfam Lateral organ boundaries (LOB) domain 34 131 IPR004883 -
Pvu5g1418 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 196 - -
Pvu5g1418 199 Coils Coil 113 140 - -
Pvu5g1418 199 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Pvu5g1418 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 14 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1418 Pvu-Chr5 36555652 36557505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1418 30 199 AS2 family AT2G28500 67.742 2.03e-80 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu5g1418 LOB 3.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1418 - - gmx:100819336 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1418 5 36555652 36557505 Pvu5g1418 5 36555652 36557505 ECH
Pvu5g1418 5 36555652 36557505 Pvu11g0741 11 6484393 6486336 PCT