Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1415 ATGGATTTGGTAGCTAGTTGCAAGGAAAAATTGCAATATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAATTGGGACTCTCAAAACAGGGAAAGAAGCAGGATCTCGTTGATAGGATATTGTCTATTCTTTCAGAGGACCAAGTTTCTAAATTGTGGATCAAGAAGAATGCATGTGGAAAACAACGGGTTGCCAAATTAGTGGAGGACACATATAGAAAATTGCAGGTATCCGGGGCCATAGACTTGTCATCAAAAGGACAGGGCTCTGATAGTAGTAATGTGAAAATTAAAAGTGAAATTGATGATACCTTTCAATCAGATACAAAGATTCGCTGTCTCTGTGGAAATGTATTGGATACGGAGCCATTGGTCAAGTGTGAAGATACACGATGTCATGTGTCACAGCACATCAACTGTGTTGTTATTCCAGATAAACCTATGGATGGAACCCCACATGTTCCTGATAAATTCTACTGTGAAATATGTCGAGTTGATCGGGCAGACCCGTTTTGTGTTTCAGTGACACACCTTTTGTTTCCGGTGAAGTTGACCACAACCAATATTCCAACTGATGGTACCAGCCCAGTACAGAGTGTGGAAAGAACGTTTCAACTCACGAAAGCAAACAAGGAGTTGGTATCAAAACCAGAATATGATGTTCAGGTTTGGTGTATGCTTTTAAATGACAAGGTTTCATTCAGGATGCAATGGCCACAATATACGGATTTAAAGGTCAATGGTCTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAGATGCTTGGGGCTAATGGACGTGACTCTGGCTCAGTTATCACACCATATTCCAAGGATGGAATTAATAGGATTTCCTTAACAGTGGTCGATGCTCGCGTGTTCTGTTTAGGGGTTCGTATTATTAAAAGGCTCACCATGCCAGAGGTTCTAAGCATGATTCCTGAGGAGCCCAATGGTGAGCGTTTTGAAGATGCTCTTGCGCGTGTTTGTTGTTGTGTTGGGGGTGGAAATGCAAATGATAATGCTGATAGTGATAGTGATTTGGAAGTGGTTTCAGATACTTTTAGCATCAATCTTCGTTGCCCAATGAGTGGTTCAAGAATGAAGATTGCAGGAAGATTCAAACCTTGTGTTCACATGGGCTGTTTTGATCTTGAAGTTTTTGTTGAAATGAATGAACGATCAAGGAAGTGGCAGTGTCCTATATGTCTTAAAAATTATTCTTTGGAGAATATCATTATTGACCCTTACTTCAATCGCATCACTACTCTGATGAAAGATTGTGGAGAAGAGATTACAGAGGTCGAGGTGAAGCCTGATGGTTTCTGGCGTGTCAAGGTTAAGAATGAAAGTGAACGTCGGGAGTTGGGAACTCTTGCTCATTGGCACCGTCCTGATGGATCCCTCTTTGTCTCTACTGATGAAATCAAGAAAATGGAAAATTTAAAGCTCAAACAGGAAGGTATTTCAGATGGTCCTATAGGTTTAAAACTTGGCATCAGGAAGAATAGTAATGGTGTTTGGGAAGTCAGCAAACCTGAGAATACAAACACCTCTTCTGGTAATAATAGATTGAATGAGGATCTTGAAAATCATGAACATGTTATTATTCCAATGAGCAGCAGTGACACTGGAAGTGGTCGGGATGAAGATGATCCAAGCGTAAATCAGGGTGGTGGTGAACATATTGATTATTCTACTACTAATGAAGTTATTATTCTTAGTGATTCAGAAGAAGACAATGATGTATTGATGTCTCCGACTCCTATAACTGGGTACAAAAATAATCAAACTAGTGCCGCAGTTGATGTTTATTCAGTGCTAGAGCCTGGAATTATTGATCCATATACGGAAGATCACAATTCTGGTGGAAATGCAGGTTTGGGAGTTTTTAATAATCATCCCAGTGAAGATGATTTTGGCATGTCCTCCCTCTGGCCATTGCAATCAGGAACTCCAGCAGTTCCAGGATTCCAATTATTTAGTTCTGAAGTGGAGGATGTGTCAGATACATTGGTTGGATTGCAGAATGGTAATATCAATTGCTCATCATCACTGAATGGTTATATGTTGGCCCCAGATACTGCTTTAGGATCTAGCACTCTTACACCAAATTCCTCGGTAGTTCGACCGGATGATGATTTAAATGGTGGGTTGGTTGACAATCCACTGGCATTTCCCAGAGAAGATCCTTCCCTCCAGATTTTTCTCCCTACCAAACCAGCAGAATCATCTCGGCAGCATGAATTGAGTGATCATGCAGACATATCGAATGGTGTCTTCACGGAGGATTGGATCTCTCTTAGTCTTGGAGGTGGTGCCAGTGGCAGTAATGGTGACGCTTCCACTGCAAATGGATTGAATTCCAGACCTCAAATTGCATCCGGAGAAGGTGCCACAAATTCCTTGACAGATACCGCTCCTTTACTCCTTGGTATCAATGATGTTAGATCTGACAAGGCAAGTCGGAAAAGATCAGATTCAGATAGCCCTTTCTCTTTTCCCCGCCAAAAACGTTCAAAACTGAAGAAAGTTGAGCAGCATTTTTGGTCCTCAGGAAATGGAAGATGA 2574 0.413 MDLVASCKEKLQYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSEDQVSKLWIKKNACGKQRVAKLVEDTYRKLQVSGAIDLSSKGQGSDSSNVKIKSEIDDTFQSDTKIRCLCGNVLDTEPLVKCEDTRCHVSQHINCVVIPDKPMDGTPHVPDKFYCEICRVDRADPFCVSVTHLLFPVKLTTTNIPTDGTSPVQSVERTFQLTKANKELVSKPEYDVQVWCMLLNDKVSFRMQWPQYTDLKVNGLPVRAINRPGSQMLGANGRDSGSVITPYSKDGINRISLTVVDARVFCLGVRIIKRLTMPEVLSMIPEEPNGERFEDALARVCCCVGGGNANDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEVFVEMNERSRKWQCPICLKNYSLENIIIDPYFNRITTLMKDCGEEITEVEVKPDGFWRVKVKNESERRELGTLAHWHRPDGSLFVSTDEIKKMENLKLKQEGISDGPIGLKLGIRKNSNGVWEVSKPENTNTSSGNNRLNEDLENHEHVIIPMSSSDTGSGRDEDDPSVNQGGGEHIDYSTTNEVIILSDSEEDNDVLMSPTPITGYKNNQTSAAVDVYSVLEPGIIDPYTEDHNSGGNAGLGVFNNHPSEDDFGMSSLWPLQSGTPAVPGFQLFSSEVEDVSDTLVGLQNGNINCSSSLNGYMLAPDTALGSSTLTPNSSVVRPDDDLNGGLVDNPLAFPREDPSLQIFLPTKPAESSRQHELSDHADISNGVFTEDWISLSLGGGASGSNGDASTANGLNSRPQIASGEGATNSLTDTAPLLLGINDVRSDKASRKRSDSDSPFSFPRQKRSKLKKVEQHFWSSGNGR* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1415 857 MobiDBLite consensus disorder prediction 775 805 - -
Pvu5g1415 857 SUPERFAMILY FYVE/PHD zinc finger 105 168 IPR011011 -
Pvu5g1415 857 SMART sap_9 11 45 IPR003034 -
Pvu5g1415 857 Pfam SAP domain 13 42 IPR003034 -
Pvu5g1415 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 170 IPR013083 -
Pvu5g1415 857 SMART PHD_3 113 165 IPR001965 -
Pvu5g1415 857 ProSiteProfiles Zinc finger SP-RING-type profile. 345 428 IPR004181 GO:0008270
Pvu5g1415 857 MobiDBLite consensus disorder prediction 817 857 - -
Pvu5g1415 857 MobiDBLite consensus disorder prediction 539 564 - -
Pvu5g1415 857 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 568 789 - -
Pvu5g1415 857 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 569 - -
Pvu5g1415 857 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 337 446 IPR013083 -
Pvu5g1415 857 CDD PHD_Bye1p_SIZ1_like 113 164 - -
Pvu5g1415 857 ProSitePatterns Zinc finger PHD-type signature. 114 164 IPR019786 -
Pvu5g1415 857 Gene3D SAP domain 1 64 IPR036361 -
Pvu5g1415 857 MobiDBLite consensus disorder prediction 818 847 - -
Pvu5g1415 857 Pfam MIZ/SP-RING zinc finger 358 406 IPR004181 GO:0008270
Pvu5g1415 857 SUPERFAMILY SAP domain 1 64 IPR036361 -
Pvu5g1415 857 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Pvu5g1415 857 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 568 789 - -
Pvu5g1415 857 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1415 Pvu-Chr5 36497178 36512237 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1415 - K22403 gmx:100803144 1454.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1415 5 36497178 36512237 Pvu5g1415 5 36497178 36512237 ECH
Pvu5g1415 5 36497178 36512237 Pvu11g0751 11 6607372 6618929 PCT