Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1414 ATGGAAATTGATCTGAACTATGCAGTGATTGAGGCTGAGAAGACCGCGTCTTGCAATGGTGAGTGTGGGAAAGGAGCTGCTTGCGTTTGCTCTCTGTCCTCTCCTACTTGTTCATCTTCTGGTTCCTCCTCCGCAAGTGTGTCCTCTTCTTATCTTGAACTCTGGCACGCTTGTGCTGGCCCTCTCACTTCCCTCCCAAAGAAAGGAAATGTGGTGGTGTATTTTCCCCAAGGGCACTTAGAACAAGCTTCATCTTTCGCTCCCTTTTCACCAATGGACATGCCAACCTATGATCTCCAGCCACAGATCTTCTGTAGAGTTGTCAATATTCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTACACACAGGTCACTTTGCTCCCCCAGGCTGAGTTGGCAGGGATGTATTTGGAGGGAAAAGAGCTTGAGGAATTGGGAGCAGATGAAGAGGGAAATGAAACAACACCTACAAAATCAACTCCTCACATGTTCTGCAAAACACTCACAGCCTCGGATACCAGCACTCATGGGGGGTTTTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCTCAGGAGCTTGTTGCCAAAGATCTGCATGGTGTGCAGTGGAAATTTCGACATATTTATAGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGCTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGAGATGCAGTTCTCTTTCTAAGGGGTGAAAATGGAGAATTGAGATTGGGAATAAGAAGAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAATTATTATCCCAATTTCCTTTCTTCTGTGGCCAATGCTATATCCGCCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCGGATTTTGTTGTTCCCTACCAAAAATATGTCAAAAGCATAAAGAATCCAGTGACCATTGGGACAAGATTCAAAATGAGATTTGAAATGGATGAATCTCCGGAAAGAAGGTGTACTAGTGGTATAGTGACTGGAACTAGTGATCTGGATCCCTATAAATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAAGATATTGAGATTAATCATCAAGATAGAGTATCTCCTTGGGAGATCGATCCTTCTGCGTCTCTTCCTCCCTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTGCAGGGTGCCTCACCCAGTCACCTCATCACTGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCCGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATTCAGGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGAGATCAGATCTCCAACAAGTCATCCAAATTTTGCATCAACTGGAGTGAGAAAAATTGCTGCTGGTGAGTTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTTAGTGAAACTAACAGGTTTCCAAGGGTCTTGCAAAGTCAAGAAATATGTCAATTGAGATCGATGACAGGAAAGGTAGATTTGAACTTTGGTGCCTGGGGCAAACCCAGTTTGAGTTGCACAAATTACAACCTGCGACAGGCAACCATACCTAACTTTCACTCTTTAGGACCAGAAGTTATTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGCCAAGTTAGCGGCACCGGCATGATGTGCTCCAAAACCTCCAATTTCCAAGGAGAGAATGTCCCATTTAACTCTCCTTCCTCTCAGTCAGGGATCATGAGAAATGAAGTTGGACGGTCAGATGTCACAATCCCAAATGAGCAGAAGCTGCAGGACAATATTTCTGGTGCTGCTTCCTTAGGGGCGACCATGAGGATTCCAAATGATGACAATTTCAACGGGAAGGTAAAGGCTTGTAAACTATTTGGATTTCCCTTGTCCGGGGAAGCCACCACCCAAAATTTACAACAGAACTCAGCTAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCGAGATTGAACAGCTACAGTGACCTGCTGATTGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAAGAGATCCTAAGAAGGGATGGAGAATCCTGTACACTGACAGTGAAAATGACATCATGGTTGTGGGAGATGACCCGTGGCATGAGTTCTGCGAGGTGGTCTCGAAGATTCATATACATACACAAGAAGAAGTTGAGAAGATGACAATTGGGATGATCAATGATGATACCCAGAGTTGTTTGGAACAGGCACCAGTGATGATAGAAGCTTCTAAGTCTTCCTCCGTGGGCCAGCCAGATTCTTCTCCAACAGTGGTTAGAATATAG 2427 0.445 MEIDLNYAVIEAEKTASCNGECGKGAACVCSLSSPTCSSSGSSSASVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQASSFAPFSPMDMPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQAELAGMYLEGKELEELGADEEGNETTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVQWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIVGSQNYYPNFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMRFEMDESPERRCTSGIVTGTSDLDPYKWPKSKWRCLMVRWDEDIEINHQDRVSPWEIDPSASLPPLSIQSSRRLKKLRPGLQGASPSHLITGGSGFMDSEESVRSSKVLQGQENSGFMSLYYGCDTVTKQPEFEIRSPTSHPNFASTGVRKIAAGEFMRVHPSSYAGFSETNRFPRVLQSQEICQLRSMTGKVDLNFGAWGKPSLSCTNYNLRQATIPNFHSLGPEVIQTAYFPYGDIHKAGQVSGTGMMCSKTSNFQGENVPFNSPSSQSGIMRNEVGRSDVTIPNEQKLQDNISGAASLGATMRIPNDDNFNGKVKACKLFGFPLSGEATTQNLQQNSAKRSCTKVHKQGSLVGRAIDLSRLNSYSDLLIELERLFSMEGLLRDPKKGWRILYTDSENDIMVVGDDPWHEFCEVVSKIHIHTQEEVEKMTIGMINDDTQSCLEQAPVMIEASKSSSVGQPDSSPTVVRI* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1414 808 CDD B3_DNA 163 265 IPR003340 GO:0003677
Pvu5g1414 808 SUPERFAMILY DNA-binding pseudobarrel domain 156 277 IPR015300 -
Pvu5g1414 808 Gene3D - 163 267 IPR015300 -
Pvu5g1414 808 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Pvu5g1414 808 Pfam AUX/IAA family 674 764 IPR033389 -
Pvu5g1414 808 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Pvu5g1414 808 ProSiteProfiles PB1 domain profile. 680 762 IPR000270 GO:0005515
Pvu5g1414 808 SMART B3_2 165 267 IPR003340 GO:0003677
Pvu5g1414 808 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu5g1414 808 Gene3D - 676 769 - -
Pvu5g1414 808 PANTHER AUXIN RESPONSE FACTOR 9 796 - -
Pvu5g1414 808 Gene3D - 329 401 - -
Pvu5g1414 808 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 796 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu5g1414 808 SUPERFAMILY CAD & PB1 domains 682 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1414 Pvu-Chr5 36489347 36495490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1414 45 808 B3 DNA Binding Superfamily AT5G60450 60.543 0.0 858
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu5g1414 AUX_IAA 3.9e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1414 - - gmx:100812909 1419.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1414 5 36489347 36495490 Pvu5g1414 5 36489347 36495490 ECH
Pvu5g1414 5 36489347 36495490 Pvu11g0755 11 6644336 6650685 PCT