Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1410 ATGTCCGTGATCGACATTCTCTTCCGCGTCGATACCATTTGCCACAAATATGACAAATACGACATCGACAAGCAGCGCGAGCTCAACGCCTATGGCGACGACATATTTGCTCGCCTCTATGCGGCTGTCGAATCCAGCATTCAAACCGCTCTCAATAAATCGGAGGCTGCTGCCGCGGAGACCAACAGGGCCGTTTCTGCTTCTTTGAATGCGGAGGTTCGTCGAACCAAGGGTAGACTCATGGACGAGATTCCTAAACTGCGCAAATTGGTGAATAAGAAGGTTAAAGGTCTCACAAAAGAGGATATGGCCATTCGTCAGGATCTTGTTCTGGCATTGCCCGAGAGAATCCAAGCAATACCAGATGGTATTTCTGGTATCCAAACTGCAGGATGGAATGAGACCTCAACTCAGCCACATATCAAGTTTGACTCATCAGAGGGACAACTTGATGGTGAATATTTCCAACAAAGTGAAGAATCCAGTCAGTTCCGACAAGAGTATGAGATGCGCAGGATGAAACAGGATGAAGGACTTGATATCATATCGGAGGGATTGGATACCTTGAAGGATCTGGCCCGTGATATGAATGAGGAATTGGATCGGCAAGTTCCACTAATGGATGAAATTGACAATAAGGTGGATAAGGCAACAGCTGAAGTGAGAAACACTAACGTGAGGCTGAAGAAAACTCTCAACGAGATAAGGTCTAGTCGAAACTTCATCATTGACATCATTCTACTCTGTGTTCTTCTGGGAATCGTTATGTATTTATACAATGCTCTGAGGTGA 792 0.4545 MSVIDILFRVDTICHKYDKYDIDKQRELNAYGDDIFARLYAAVESSIQTALNKSEAAAAETNRAVSASLNAEVRRTKGRLMDEIPKLRKLVNKKVKGLTKEDMAIRQDLVLALPERIQAIPDGISGIQTAGWNETSTQPHIKFDSSEGQLDGEYFQQSEESSQFRQEYEMRRMKQDEGLDIISEGLDTLKDLARDMNEELDRQVPLMDEIDNKVDKATAEVRNTNVRLKKTLNEIRSSRNFIIDIILLCVLLGIVMYLYNALR* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1410 263 PANTHER SYNTAXIN-72 1 260 - -
Pvu5g1410 263 PANTHER SYNTAXIN 1 260 IPR045242 -
Pvu5g1410 263 Coils Coil 207 234 - -
Pvu5g1410 263 CDD SNARE_Qc 174 230 - -
Pvu5g1410 263 Pfam SNARE domain 206 255 IPR000727 -
Pvu5g1410 263 SUPERFAMILY SNARE fusion complex 162 230 - -
Pvu5g1410 263 Gene3D - 169 230 - -
Pvu5g1410 263 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 169 231 IPR000727 -
Pvu5g1410 263 SMART tSNARE_6 164 231 IPR000727 -
Pvu5g1410 263 ProSitePatterns Syntaxin / epimorphin family signature. 175 214 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1410 Pvu-Chr5 36451728 36454692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1410 1 263 SNARE and Associated Proteins AT3G09740 65.169 2.42e-129 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1410 K08506 - gmx:100777251 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1410 5 36451728 36454692 Pvu5g1410 5 36451728 36454692 ECH