Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1409 ATGGAGGGAGATCAACTGAACTCGGGTTACTCTTTCCCACCTGGCTTCAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACTTGCAAAACAAAATCAGTTCACGTCCACTTCCAGCATCTATTATAGCTGAAATAGATCTCTACAAGTATAACCCGTGGGAGCTACCCAATAAGTCTTTGTTTGGAGAAGAGGAGTGGTATTTCTTTAGCCCAAGAGACAGAAAGTACCCAAATGGGTTGAGGCCAAACAGGGCAGCAGCCTCAGGATACTGGAAGGCAACAGGAACGGACAAGCCAATTCTTTCTTCTAGTGGATCAAAGCGCATAGGAGTGAAGAAAGCTCTGGTGTTTTATTCAGGTCGACCTCCTAAGGGATCTAAGACGGATTGGATCATGAATGAATATAGATTGATTGACACAATCACCAAATCCTCCAGGCTAAAAGGCTCCATGCGGTTGGATGACTGGGTACTGTGCCGGGTTCGACATAAAGGCTACTCTTCGAAGATATCATGTGAAAATCAAGAGAATCCTAGTGAACTAAACCTTTCTGCAAAACTACCGAGGAGTGAAGAATATCCAACAAACATGAACTGTCGGACTGACATGATCACTGATTATCAATACAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGCACCTGTATCTCCCACTGAAAACATGCCAAATATGAGCTTTAAGGGCTGCAAAGGCACCAATCTAGTTTCAGTTTTTGAAGATGGTTTCACTAAAGTGAATTCTCAGATGACTTTTCCTTCTTTGGACAGTTACTTCAACCCACTGGCAAGAAAATCTAATGAAGATGAACAGGAGGGAAATCTCATTTCTTTTAACAGGAAGTCTGAGAACAAAATGGATGAATCACCTAGCAGGGTGTTGGCCAGTAGAGAATTGAACTGTTATAACCAAAACCAGTCTCAAGATGACATTTTCAGTGAGAACCTACCTGACACTGGCATCAATTTTCAAGAGCTTAACGATTTAGTCTTTACAGGAAGGTACCCTCAGTGA 1044 0.4205 MEGDQLNSGYSFPPGFRFHPSDEELIVHYLQNKISSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSSGSKRIGVKKALVFYSGRPPKGSKTDWIMNEYRLIDTITKSSRLKGSMRLDDWVLCRVRHKGYSSKISCENQENPSELNLSAKLPRSEEYPTNMNCRTDMITDYQYKDYQIIASILVGAPVSPTENMPNMSFKGCKGTNLVSVFEDGFTKVNSQMTFPSLDSYFNPLARKSNEDEQEGNLISFNRKSENKMDESPSRVLASRELNCYNQNQSQDDIFSENLPDTGINFQELNDLVFTGRYPQ* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1409 347 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Pvu5g1409 347 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Pvu5g1409 347 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Pvu5g1409 347 PANTHER NAC TRANSCRIPTION FACTOR 56 1 304 - -
Pvu5g1409 347 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 304 - -
Pvu5g1409 347 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1409 Pvu-Chr5 36448917 36451058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1409 5 177 NAC Transcription Factor Family AT1G69490 65.318 4.59e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu5g1409 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1409 - - vra:106759457 665.996