Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1408 ATGATGTCTGGTGAAGCAATAACTGTCCCTTCCAACCTCGGAGATTCCTCGGTTCAAGTCCATGACCCAAACTCAAACCCTAATCCTAACCCTAATCCAAACTCATCGGTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCGACGAACCGGTTCATCTGCGAAGTGTGCAACAAGGGGTTTCAGCGAGACCAGAACCTGCAGCTGCATCGGCGAGGGCACAATTTGCCGTGGAAGCTGCGGCAGAGGACGAAGGAAGAGGTGAGGAAGAAGGTGTACGTGTGTCCGGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCCTGGGAGACCTCACTGGGATTAAAAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATACGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACGATATTCTCCAGGAAGGACAGCTTTGTAACACATAGAGCCTTTTGTGACGCTATGGTGGAACAAAGTACGAGACTTCCGGCAGTTTTATCAAACCACCTTGGAAACGATATTTTGATGAACGCTCAAGGCCCGAGGGTAATGCCTCAGGGTCTACAATTACACGGGTTTCATTCAGAGTTTGGTGGGCCAGGTCCAGAATCATACATGGGGAATTTTGCTGATGCTGAACATGTTGAACATAAGCTAAGGTTGCCGTTATGGCTAGACCAGACAAATCTTCAACTCAACCATCCTCTTGGCGTTGTTCCGGGCAACTCAAGTGTATTCTCACCAGGAGCAACCTTGCCTGAAACAAACAACATTTTCGGGACATCGTCGTCACAGGCACAGTGGGCGAATTACCGATACCCAGAAGCATCTTTTGCATGTGCCAGTGTTTCTATGCCTCATGGACTGAAGCTAGAGCAAGAAGACAACAAAGGGGAGTTGTCGCATTGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTACAAGGATGAGTGGTACTTCACCCTTCGACAACTCTAACTTCGGCCTGTTAGACCCGAACATGTCAAGCACGTCAACCAACAACCGGAGCAACGTGGTTGAAATTCAGAAGTTATTCAAGCAAGGAAACCAGCCTGAAAACTTGAATCTCATGGTGAATTCCCAGGCAAGCAGAGGTGGGTTTTCCTTGAGTTGCAGGAAGAGTTTGGAGCATATGGTGATGCCACGGATCGAAGAGTGGGGAAGTGGAGAAGCAGAAATAACGGAGAAGCAAGTACGTTCAAGTTCAAACACTGAAGAGCACTTAACCAAAGACTTCATGGGTGTTGGAGATGGGTCACTAAGCAGGCAAATGGGGCCAGTGATGAACCTGCAAAGGCAGTTCCGTGGACACTACTGA 1458 0.4849 MMSGEAITVPSNLGDSSVQVHDPNSNPNPNPNPNSSVKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRTKEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDAMVEQSTRLPAVLSNHLGNDILMNAQGPRVMPQGLQLHGFHSEFGGPGPESYMGNFADAEHVEHKLRLPLWLDQTNLQLNHPLGVVPGNSSVFSPGATLPETNNIFGTSSSQAQWANYRYPEASFACASVSMPHGLKLEQEDNKGELSHCVSSLYPSHMESTRMSGTSPFDNSNFGLLDPNMSSTSTNNRSNVVEIQKLFKQGNQPENLNLMVNSQASRGGFSLSCRKSLEHMVMPRIEEWGSGEAEITEKQVRSSSNTEEHLTKDFMGVGDGSLSRQMGPVMNLQRQFRGHY* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1408 485 MobiDBLite consensus disorder prediction 1 51 - -
Pvu5g1408 485 MobiDBLite consensus disorder prediction 1 41 - -
Pvu5g1408 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Pvu5g1408 485 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Pvu5g1408 485 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 27 358 - -
Pvu5g1408 485 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
Pvu5g1408 485 Gene3D Classic Zinc Finger 122 200 - -
Pvu5g1408 485 SMART c2h2final6 143 163 IPR013087 -
Pvu5g1408 485 SMART c2h2final6 67 89 IPR013087 -
Pvu5g1408 485 SMART c2h2final6 108 138 IPR013087 -
Pvu5g1408 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 358 - -
Pvu5g1408 485 Gene3D Classic Zinc Finger 46 118 - -
Pvu5g1408 485 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1408 Pvu-Chr5 36426999 36429796 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1408 14 200 IDZ Gene Family AT3G50700 77.005 4.18e-110 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g1408 zf-C2H2_jaz 8.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1408 K25870 - gmx:100811687 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1408 5 36426999 36429796 Pvu5g1408 5 36426999 36429796 ECH
Pvu5g1408 5 36426999 36429796 Pvu11g0761 11 6750302 6753277 PCT