Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1404 ATGAGTGCTCAACAAAAAGAAACGGAAAAACATGACACGCTTTCGTCCAATCGAACGGTGGATGATACGATGGGTGCAACCGATGAAACCTCGCATGTAAACAATGAGTGGAAGCCAGAGAAAATTCAGTTCGAAATACCGACCAGAACATCGGAAGACTCTTGTTGGGATTTTGTTGGAATAAGGATGCCACTGACGCCAAGTCCAACTCCCAGTCATAAGAGAGTGAATTTTCTTGTCACTTCTCGCTCTGTTGATGCTCCTAGACCTTCTTCTTCTTCGGCTCCCAGAGGCAAATCATCCATGAGGAACATCTTACCAAGATTCGGCTTCAAGAATCGTCAATCGCTTGATGTTGAAAAGGCTGTTACCGCAGTTTCAGAAGCTTCTTTTTCAGGTCATCAAGAAAAGTCCTCAATCTCCAGATCAGTGTCTCTCACCAAGATATTCACTCATAAGATTAACAGAACGTCTTCGTTACCGGTAGAAGAAATTGGGCGTGCAAACGCAGAATCTGCTCTGGGTGGAAATCTTGGTGCTTCTCCATGCGGAAGAGAAACTCAGGGGATGATAGCTCGATCTCGTTCAGTGCCTGTCAATAGCAAAGAAAAAGGCATCAGGAGAATGGATTCAGTTTTCCGCATCATTCCTTCCACTCCTCAAGTACATGAAGTGAATGAATCAACTAAGGATACTGGCTTAGAAAATGGTGGTGGTGAAGATATTGGTGAAGAGGAAGCGGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTGGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAAGTTCAGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACCCAGAATACTGGAGCAAGGTCCGAGCAGGGAGATGAATACAGGGTTTGGCAGGAACTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGAACCAAGGCAATTTTCGTCTCTCTTCCATTTTCATGTGTACTAGGCCTACTCTCCTCCGTGACGTCAACAACCATGGTGACGAGCAAGTTCATCTGGTTATATGCATCTGTCCAATTTCTTTCGGTGGTCATATTCGCCCATATATTTTACCCCCTGGTTGGTAAGCATGCGGTTTTGTCGATCCTTCTTGCTACATTTGCTGGCTTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGTTTTCTAGATGGAGAAGAAGATGGCTAGCTTTATCAGAGCAGCAGCGTGGTTCTTCAGCGTGA 1380 0.4507 MSAQQKETEKHDTLSSNRTVDDTMGATDETSHVNNEWKPEKIQFEIPTRTSEDSCWDFVGIRMPLTPSPTPSHKRVNFLVTSRSVDAPRPSSSSAPRGKSSMRNILPRFGFKNRQSLDVEKAVTAVSEASFSGHQEKSSISRSVSLTKIFTHKINRTSSLPVEEIGRANAESALGGNLGASPCGRETQGMIARSRSVPVNSKEKGIRRMDSVFRIIPSTPQVHEVNESTKDTGLENGGGEDIGEEEAVCRICLVDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVQNLPVTLLRIRSVQTQNTGARSEQGDEYRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAIFVSLPFSCVLGLLSSVTSTTMVTSKFIWLYASVQFLSVVIFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEFSRWRRRWLALSEQQRGSSA* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1404 459 Pfam RING-variant domain 249 296 IPR011016 GO:0008270
Pvu5g1404 459 MobiDBLite consensus disorder prediction 83 103 - -
Pvu5g1404 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 304 IPR013083 -
Pvu5g1404 459 ProSiteProfiles Zinc finger RING-CH-type profile. 241 303 IPR011016 GO:0008270
Pvu5g1404 459 CDD RING_CH-C4HC3_MARCH 249 297 - -
Pvu5g1404 459 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 455 - -
Pvu5g1404 459 SMART ringv_2 248 297 IPR011016 GO:0008270
Pvu5g1404 459 MobiDBLite consensus disorder prediction 1 17 - -
Pvu5g1404 459 MobiDBLite consensus disorder prediction 83 100 - -
Pvu5g1404 459 MobiDBLite consensus disorder prediction 1 39 - -
Pvu5g1404 459 MobiDBLite consensus disorder prediction 18 32 - -
Pvu5g1404 459 PANTHER OS02G0165000 PROTEIN 18 455 - -
Pvu5g1404 459 SUPERFAMILY RING/U-box 245 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1404 Pvu-Chr5 36371524 36375893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1404 246 303 C3H Transcription Factor Family AT2G37950 45.763 2.05e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1404 - - gmx:100782610 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1404 5 36371524 36375893 Pvu5g1404 5 36371524 36375893 ECH
Pvu5g1404 5 36371524 36375893 Pvu11g0810 11 7303167 7309351 PCT