Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1398 ATGGCCAAAGACGTTGAGCAGGTCACAGAGCAACCCGAATACTCCGCCAAGGACTACCACGACCCACCTCCCGCGCCGTTGTTCGACCCCGATGAGCTCACCAAGTGGTCCTTGTACAGAGCCGCCATAGCCGAATTCATAGCCACCCTCCTCTTCCTTTACATCACCGTCTTGACCATTATCGGCTACAAGAGACAGACCGACACCAGTATTCCCGGTAACACCGAGTGTGACGGCGTTGGCATTTTGGGCATCGCGTGGGCCTTCGGTGGCATGATCTTCATCCTCGTTTACTGCACCGCTGGCATCTCCGGGGGACACATCAACCCTGCAGTCACACTGGGGTTGTTCCTGGGGCGCAAGGTGTCGCTGGTGAGGGCGTTGTTGTACATAGTAGCACAGTGCGCCGGTGCAATCTCCGGTGCTGGGTTGGCGAAGGCGTTCCAAAAATCCTTCTACAACAGGTACGGTGGAGGAGCCAACACTGTGAGCGATGGCTACAACAAAGGCACTGCCTTGGGTGCTGAAATCATCGGTACCTTTGTTCTTGTCTACACAGTTTTCTCCGCCACCGATCCTAAGAGAAACGCTAGGGACTCTCATGTTCCTGTACTAGCACCCCTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTATCACTGGAACCGGCATTAACCCGGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTATTGGAGCTGCGGTGGCTGCATTTTACCACCAGTACATTCTGAGAGCTGCAGCAATAAAGGCTCTTGGATCCTTCAGGAGCAACGCATAA 864 0.5405 MAKDVEQVTEQPEYSAKDYHDPPPAPLFDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQTDTSIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTLGLFLGRKVSLVRALLYIVAQCAGAISGAGLAKAFQKSFYNRYGGGANTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFIGAAVAAFYHQYILRAAAIKALGSFRSNA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1398 287 ProSitePatterns MIP family signature. 107 115 IPR022357 -
Pvu5g1398 287 MobiDBLite consensus disorder prediction 1 25 - -
Pvu5g1398 287 Pfam Major intrinsic protein 32 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1398 287 TIGRFAM MIP: MIP family channel proteins 44 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1398 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 287 IPR034294 -
Pvu5g1398 287 SUPERFAMILY Aquaporin-like 32 273 IPR023271 -
Pvu5g1398 287 MobiDBLite consensus disorder prediction 1 17 - -
Pvu5g1398 287 Gene3D Glycerol uptake facilitator protein. 25 287 IPR023271 -
Pvu5g1398 287 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1398 287 PRINTS Major intrinsic protein family signature 89 113 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1398 287 PRINTS Major intrinsic protein family signature 126 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1398 287 PRINTS Major intrinsic protein family signature 175 193 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1398 287 PRINTS Major intrinsic protein family signature 211 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1398 287 PRINTS Major intrinsic protein family signature 251 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Pvu5g1398 287 PANTHER AQUAPORIN PIP2-7 1 287 - -
Pvu5g1398 287 CDD MIP 40 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1398 Pvu-Chr5 36324908 36326497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1398 1 285 Major Intrinsic Protein MIP AT5G60660 80.351 4.82e-169 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1398 K09872 - gmx:732604 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1398 5 36324908 36326497 Pvu5g1398 5 36324908 36326497 ECH
Pvu1g1834 1 44052908 44055413 Pvu5g1398 5 36324908 36326497 ECH
Pvu7g1559 7 37339423 37341140 Pvu5g1398 5 36324908 36326497 ECH
Pvu5g1398 5 36324908 36326497 Pvu11g0816 11 7352592 7354459 PCT