Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1390 ATGAAGGAAACCGAGAAGAGTTTGGATCCGCAGCTGTGGCACGCATGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTCTTTTACTTTCCTCAGGGACACGCAGAACATGCGCAGTCCAACCTTGATTTCGGAGCCTCCAGGATTCCGATTCCGCCGCTCGTTCTATGCCGCGTGGCGGCTGTCAAATTCCTCGCCGACCCCGAAACCGACGAGGTCTTCGCCAGGTTGAGGCTGGTTCCTCTCAGAAACACCGAGCTTGACCACGAAGACGGCGACAACGTTGACGGTAACGGCGCGGAGGGTTCTGAAAAGCCGGCGTCTTTCGCGAAGACATTAACTCAATCGGACGCCAACAATGGTGGGGGATTCTCTGTGCCGAGATACTGCGCGGAGACGATTTTCCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTGCAGACGGTGATCGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTTCGACACATTTACCGAGGGACGCCGCGTCGGCACTTACTTACCACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCTGGGGATTCCATAGTGTTTCTGCGGGCTGAAAATGGGGATCTCTGCGTGGGGATTCGTAGGGCGAAGAGAGGGGGTGTTGGTGGGCCCGAGGCGCCGTGTGGGTGGAGTTCTGGTGGTGGTGGTGGCGGTGGGCTTGGGATTGGGCCTTATGGAGCCTTTTCGGCTTTCTTGAGGGAGGAGAGCAAGGTGGTGAGGAATGGGTGTGGGAGGCCGAAAGTGAGTGGTGAGTCTGTGAGGGAGGCTATTGCTTTGGCTGCTAACAACCAACCCTTTGAGATTGTTTATTACCCTCGAGCCAACACTCCTGAGTTTTGTATTAGGACTTCTGCTGTGAGAGGTGCTATGAGGATTCAGTGGTGCTCTGGGATGAGGTTTAAGATGCCCTTTGAGACTGAGGACTCTTCCAGGATAAGCTGGTTCATGGGCACCATAGCTTCTGTTCAGGTTCTTGATCCTATCCGCTGGCCTAATTCACCTTGGAGGCTTCTTCAGGTTACGTGGGATGAGCCAGATTTGCTACATAATGTGAAGCGCGTAAGTCCATGGTTGGTTGAGTTGGTATCTAACGTGCCAGTCATCCATCTGGCACCATTCTCTCCACCAAGGAAGAAGCTTAGGTTTCCACAACACCCAGAGTTTCCCCTTGATGTTCAATTTCCGATACCAACATTTTCAGGCAACCCTTTTGGGTCTAGCACCAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATAACTTTGTCAGATCTCCACCTTAACAATAATAAGCTGCAGTTGGGGTTGCTTCCAACTAACGTTCGCCAGCTTGATTTGCACACTGGGATTTCTAATGTCAACATCACCAACCATGGTAAGAGTAAAGAAAGTCTATCATGCTTGCTGACCATGGGAAGTTCACGCAAGAGTTTGGAGAAATCTGATCGAGTGAAGAGACACCAATTTTTGCTTTTCGGTCAACCGATACTCACCGAGCAACAAATTTCTAGATCTTCTGGTGATGTGTTTTCTCAAAATTGCACCGCAACAGATGATGAGAACAAGGAGAAAAAGGAGAAGGGTTTTAGTGACTCCCAGTCTTCAGTTTCCCCCGGAAAGTCATCTTCCACCACCGAGTTCTCTTGGCAACTGGGTTCGGATACCAGTCATTGCAAGGTTTTCATGGAGTCCGAAGATGTGGGACGGACCCTTGACTTGTCCTGTCTTGGTTCTTATGACGAGCTGTACATGAGACTGGCCAGCATGTTTGGAATAGAACGGTCTGAGATGTTGAGTCATGTTCTCTACCGCGATGCCACCGGTGCTCTCAAACAAACTGGAGAAGAACCATTCAGTGAGTTCATGAAGACCGCTAAAAGATTGACAATTCTGAGTGATTCAAGCAGCAAAGACAGTAGAAGGATTTGGATGACAGGAACTCGAAATGCTGAACATGGATTGGATGCTACTTCAAATAAGACAGGTCCTATGAGTATATTTGCTTGA 2097 0.5093 MKETEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQSNLDFGASRIPIPPLVLCRVAAVKFLADPETDEVFARLRLVPLRNTELDHEDGDNVDGNGAEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEAPCGWSSGGGGGGGLGIGPYGAFSAFLREESKVVRNGCGRPKVSGESVREAIALAANNQPFEIVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNVPVIHLAPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNPFGSSTSSPLCCLSDNAPAGIQGARHAQIGITLSDLHLNNNKLQLGLLPTNVRQLDLHTGISNVNITNHGKSKESLSCLLTMGSSRKSLEKSDRVKRHQFLLFGQPILTEQQISRSSGDVFSQNCTATDDENKEKKEKGFSDSQSSVSPGKSSSTTEFSWQLGSDTSHCKVFMESEDVGRTLDLSCLGSYDELYMRLASMFGIERSEMLSHVLYRDATGALKQTGEEPFSEFMKTAKRLTILSDSSSKDSRRIWMTGTRNAEHGLDATSNKTGPMSIFA* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1390 698 Gene3D - 110 214 IPR015300 -
Pvu5g1390 698 Gene3D - 311 384 - -
Pvu5g1390 698 MobiDBLite consensus disorder prediction 561 578 - -
Pvu5g1390 698 SMART B3_2 112 214 IPR003340 GO:0003677
Pvu5g1390 698 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu5g1390 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 674 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu5g1390 698 CDD B3_DNA 111 212 IPR003340 GO:0003677
Pvu5g1390 698 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Pvu5g1390 698 PANTHER AUXIN RESPONSE FACTOR 2 674 - -
Pvu5g1390 698 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Pvu5g1390 698 Gene3D - 582 669 - -
Pvu5g1390 698 MobiDBLite consensus disorder prediction 538 578 - -
Pvu5g1390 698 ProSiteProfiles PB1 domain profile. 585 665 IPR000270 GO:0005515
Pvu5g1390 698 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1390 Pvu-Chr5 36164182 36167531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1390 4 667 B3 DNA Binding Superfamily AT4G30080 60.266 0.0 776
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu5g1390 B3 4.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1390 - - gmx:100778135 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1390 5 36164182 36167531 Pvu5g1390 5 36164182 36167531 ECH
Pvu5g1390 5 36164182 36167531 Pvu11g0824 11 7468846 7472509 PCT