Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1389 ATGTCTGAGTGTTTCGAACCGGATATTGCTAACATGAAGGACTCTTGGTTTTTCGACAATAACTTCAATGGTCTGTCTGATGATATTTTTGATGATGTCGTGGGCTTTTTTGATTTCCCACTGGAAGATGTGGAAGAAGACTGGGATTCTCAATTTAAATGCCTTGAAGACCAACATTCTGAGATTTTTTCAGCGTCATCAAATGGGCTGTGTGGCAAAACTCAAACTGAAAACCCCCAACTTGGGACGGAGTTCTCTGTTTCTTGCAATGGGATTTCCCCAATAAAACAGCTGGCAAAGGCTCCTGGACCAACATATGGAAAAACCATTCCCCTCAAGAATGTCACTTTCAATGGAAAAGATTTGCATCAATTCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCCTCCGTTGAGAATTCGAACTTTGATCGGCCTGTCATTCCAGTAAAGCGTGCTCGAAGTAAACGGCAGCGCCGTTCAAGCTTGAGTCCACTATTTTCCATTCCTTACATCCTTAACGCACAGGCTTTGCAAAATCAGCAAAGGACATCTGCCTCTGAATCAGATTTCGAAACAAATGTTGCTGGGAATATGTCAAACAAAGTAAAAAGCCACAGAAAAAAGGACTTGTCCCTGCTATCAGAAGATGTTGAGATGATGAGATCCTCACATCTGGTGTCAGATCCCCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTGTGCAATGCTTGTGGCGTTCGATACAGGTCAGGCCGCCTCTTTCCTGAATACCGGCCAGCAGCTAGCCCAACTTTTGTTTCATCATTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCAGAGTTGAGGAGGGTGTTAGGGGTTCTATGTTTGCTTCATCAAATCTCCATGGAAATTCTGTAGGATAA 972 0.4414 MSECFEPDIANMKDSWFFDNNFNGLSDDIFDDVVGFFDFPLEDVEEDWDSQFKCLEDQHSEIFSASSNGLCGKTQTENPQLGTEFSVSCNGISPIKQLAKAPGPTYGKTIPLKNVTFNGKDLHQFRTYSPVSVFESSSSSSVENSNFDRPVIPVKRARSKRQRRSSLSPLFSIPYILNAQALQNQQRTSASESDFETNVAGNMSNKVKSHRKKDLSLLSEDVEMMRSSHLVSDPPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVSSLHSNCHKKVVEMRSRVEEGVRGSMFASSNLHGNSVG* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1389 323 Pfam GATA zinc finger 238 271 IPR000679 GO:0006355|GO:0043565
Pvu5g1389 323 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 30 302 - -
Pvu5g1389 323 Gene3D - 231 304 IPR013088 GO:0006355|GO:0008270
Pvu5g1389 323 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Pvu5g1389 323 SMART GATA_3 232 282 IPR000679 GO:0006355|GO:0043565
Pvu5g1389 323 PANTHER GATA TRANSCRIPTION FACTOR 30 302 - -
Pvu5g1389 323 CDD ZnF_GATA 237 284 IPR000679 GO:0006355|GO:0043565
Pvu5g1389 323 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Pvu5g1389 323 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1389 Pvu-Chr5 36151326 36155985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1389 19 312 C2C2-Gata Transcription Factor Family AT1G08010 36.677 1.03e-53 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pvu5g1389 GATA 3.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1389 - - gmx:100813303 488.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1389 5 36151326 36155985 Pvu5g1389 5 36151326 36155985 ECH
Pvu5g1389 5 36151326 36155985 Pvu11g0825 11 7501302 7509032 PCT