Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1371 ATGGATGTTTTAAGGCCTGAGTCTCATGTGGCACAGCAAATTCGGCGCGAAAAATTGAGAATCCAAAACAGTTCTCAACCTCTGCACGAATTCCCTAACAATCTTGAACCGTTATCTTTGCAGCCGGGGTTTAATAACTTTGACCTTCTTCATGTTAGGAATGTTAGAAATGCTAACATGCTTGATGAACCAGTTGTTTATTCACTAGAAATGCCAAACTTCTCCACTTCTTTGAATCCTTTGTCTGCTCCAAAGAACGCATTGGAGTATCATCAAGAAATAGGTGCAGCTGAACCGAGCAATAGGCTGATGATGAATCAGTATGGTTCATTTTCCCATTCCATGCCTGCTATTCATTCTTCCCACAAGGAACAGTGTGAGATTCGTAATTTGGGAAATTGGAGGAACAGTGCTCCCCAACAAGGATCTGATTGGTTTGTAAATTATGCAAGTAATGCCAATTCTTTTTTGCCTTCTGAGCTCAACAATGTGTCTTCTTACAATGAACTAATGGATGTACAGTGTAGCAATGCATCTGATGAAATCAGTGATAGAGAAATTCAAAAGCAATTAGGTGTACTGCATAATCCCCCTCCTCCTCCTTCTCCACTGTATCAGAATGCTTTTCAAGATATTGTGAAGTCGACTTCTATCAGCGCCCACACCAGGCAAGATATGACTTCCCTAATGCAACAAAACGACCACAGCATCTGGGTGGGTGGTGCTAGTGAAGTTGAGCTTCAACAACCGAGTTATGGAAATCAGTCAAATCCGGTTCGTTTTGGATGGACAAATCGAGCAATAGATAATATCCCGAGTGATTCACTTCCTCAGAGCTTATCCTTGTCACTTTCATCGAATGCACAACCCAAACCTTCTGTTTCTCAACATGAGCAAGGGTCTACGTCCGAGTATCCTCGTTGTTTGAAGTACATGAAATCGTCTATTGTTTCTAGAGATTGTGCGAAATCAGTTCAAGACACGGTGGGAATGCCTTCAAAGAGTACTATTAGTTACCGAAGTGTGGGTCCCCTTGGCCCTTTCACCGGGTATGCTACTATTCTTAAGAGTTCAAGGTTCTTAAGGTCTGTCCAACAGTTGTTAGATGAGATTTTCTGTCTATCTGGTGCAAAGTTTGCGAAATCATATGATGTTTCAGAACGGGTTTCTCCAGAAGTTAGTGCTTCTACTTCTGCAGATACTGTTACTGTCAATGAAACTGGGGTTACTGCAAAAGGTAGTAACTCAGGTTCTTCATCAACTATGTTGTATAATCTCTCAAAGGAAAATAGTGCTGATTTGGGAGTTGGAAGTAGCTTTGATCTTTCTTCGCGGCCAGATTATCAACAGAAGAAGGCAAAACTACTGTACATGCAAGAGGAGGTTACGAGGCAATGCAAGCAGTACCATCTACAAATGCAAATGGTTATTTCATCGTTCGAGTCAGTAGCGGGTCTTAGTTCTGCTACTCCTTACATCTCCATGGCTCTCAAGTCAGTATCAAAACACTTCAGGTGCCTAAAAAATTCTATATCAGATCAGCTCAAGCTTATAAGCGAAGCCTTGGGAGAGGATGTGTCAATACCCTCTACCAGTACTGGCAGTAAAGCTGACACTACTATGGCAAGGATAAGATGCAGCATGGACCAAAGCTTTCTAAGGAACAAATCTGGCAAGGGTACTACGGATCATCTTGATCCCCAGCAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACAGGCTGGCTAGTCAAACAGGTCTATCACGGAATCAGGTATCAAATTGGTTCATAAATGCTCGAGTACGAGTATGGAAGCCAATGGTTGAGGAAATACACATGCTGGAAACAAAAGCAACAGGCACCAAGGAGAAGAGTGGTAGACATGAGGGAACATCTTCTGGTCCTGAAGGTGATACCAGCCAACCTAGAGTGGATATGCCTTTGAGCAATATTGGTATGAATTCAATACCTGAAAACCGATTTGAGGGTATGGAAATGGAATCAAGCAATGCTGACGAAAGTGGGTTAAACGAAGAACAATGGAGTCAAGAGAAGAGATCTAAATTGGAATGCCAAATGACATCAAACACCATGGATGGTACACTGATGGGTTTTGTGCCATACCGACGTGGTGGCCTTGAGGTTGGTGGACTTGGTTCTGTGTCACTAACGTTGGGTCTTAGGCATGGCGTTGAAGGAGTACAACACCCACAACAATTGCAAGAGGAGCAGCTTAGACATCACCTTGGAGGGCACATGATCCATGACTTTGTGGGCTGA 2358 0.4317 MDVLRPESHVAQQIRREKLRIQNSSQPLHEFPNNLEPLSLQPGFNNFDLLHVRNVRNANMLDEPVVYSLEMPNFSTSLNPLSAPKNALEYHQEIGAAEPSNRLMMNQYGSFSHSMPAIHSSHKEQCEIRNLGNWRNSAPQQGSDWFVNYASNANSFLPSELNNVSSYNELMDVQCSNASDEISDREIQKQLGVLHNPPPPPSPLYQNAFQDIVKSTSISAHTRQDMTSLMQQNDHSIWVGGASEVELQQPSYGNQSNPVRFGWTNRAIDNIPSDSLPQSLSLSLSSNAQPKPSVSQHEQGSTSEYPRCLKYMKSSIVSRDCAKSVQDTVGMPSKSTISYRSVGPLGPFTGYATILKSSRFLRSVQQLLDEIFCLSGAKFAKSYDVSERVSPEVSASTSADTVTVNETGVTAKGSNSGSSSTMLYNLSKENSADLGVGSSFDLSSRPDYQQKKAKLLYMQEEVTRQCKQYHLQMQMVISSFESVAGLSSATPYISMALKSVSKHFRCLKNSISDQLKLISEALGEDVSIPSTSTGSKADTTMARIRCSMDQSFLRNKSGKGTTDHLDPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHRLASQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGTKEKSGRHEGTSSGPEGDTSQPRVDMPLSNIGMNSIPENRFEGMEMESSNADESGLNEEQWSQEKRSKLECQMTSNTMDGTLMGFVPYRRGGLEVGGLGSVSLTLGLRHGVEGVQHPQQLQEEQLRHHLGGHMIHDFVG* 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1371 785 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 44 757 - -
Pvu5g1371 785 SMART prehox3 349 513 IPR006563 -
Pvu5g1371 785 MobiDBLite consensus disorder prediction 641 677 - -
Pvu5g1371 785 SMART HOX_1 572 636 IPR001356 GO:0003677
Pvu5g1371 785 MobiDBLite consensus disorder prediction 658 677 - -
Pvu5g1371 785 SUPERFAMILY Homeodomain-like 574 638 IPR009057 -
Pvu5g1371 785 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 44 757 - -
Pvu5g1371 785 ProSiteProfiles 'Homeobox' domain profile. 569 632 IPR001356 GO:0003677
Pvu5g1371 785 MobiDBLite consensus disorder prediction 641 657 - -
Pvu5g1371 785 CDD homeodomain 572 633 IPR001356 GO:0003677
Pvu5g1371 785 Pfam Associated with HOX 354 512 IPR006563 -
Pvu5g1371 785 Gene3D - 575 637 - -
Pvu5g1371 785 MobiDBLite consensus disorder prediction 279 302 - -
Pvu5g1371 785 Pfam Homeobox KN domain 589 628 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1371 Pvu-Chr5 35895802 35901373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1371 455 642 Homeobox Transcription Factor Family AT5G02030 57.895 2.37e-60 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu5g1371 POX 3.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1371 - - gmx:100790583 1187.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1371 5 35895802 35901373 Pvu5g1371 5 35895802 35901373 ECH
Pvu5g1371 5 35895802 35901373 Pvu11g0845 11 7746056 7753053 PCT