Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1357 ATGCAGAGATCCGGGTATGGCTCCGACGGAATATTCCGGTCACTGAGACCTTCAATCGCTCTCCCCAAACAACCCAACCTCACACTCGTTTCCCATCTATTCAACAGAGTCGCACCATTTCCCTCCAAACACGCCCTTATCGATGCCGATTCTTCCCAAACCCTTTCATTCGCGCAGTTGAAGTCGCTAACCGTTAAAGTCTCACACGGCCTCCTCCGTCTCGGCGTCGCCAAAAACGACGTCGTCCTCTTCCTTGCCCCCAACGATATCCGCTACATCGTCTGCTTCCTCGCTGTCACCTCCCTCGGCGCCATCGTCACTACCGTCAATCCCGCCTACACCGCCGCCGAGGTCGCCAAACAGGCCAAAGACTCCAATCCCAAATTTGTCGTCACTGTCCCCGAACTCTGGGACAAGCTCCAACACCTCAACCTCCCCGCTGTGTTCCTTCATTCCCGCGCGCACTCCAACGCGACTAGCTTCGACGCGCTCGTCCATCTCGCAGGGTCGCCTACCGAGTTTCCGAAAGTTGACGTCAAGCAGAGTGACACGGCGGTGCTGCTGTACTCCTCCGGGACCACTGGCCTGAGCAAGGGCGTGGTTCTAACGCACGGGAACTTCGTGGCGGCATCGTTGATGATAGGATTGGACGATGATTTGGCCGGGGAGATGCATAGCGTGTTCCTCTGCGTTCTGCCGATGTTTCATGTGTTTGGTTTGATGGTGATTTCGTACTCGCAGCTTCAGAGGGGCAGTGCTGTGGTGTCTCTGAAGAAGTTTGAGTTTGAACTGGTTTTGAAGACGATTGAGAAGTTTAGTGTGACGCATTTGTGGGTTGTGCCTCCGATTATTCTTGCTTTGGCCAAACATGGTTTGGTTGATAAGTATGATCTTTCTTCGCTGAAGCATATTGGTTCTGGCGCTGCTCCTCTTGGGAAAGAGTTGATGGAGGAGTGTGCTAAACGTTTCCCTCGTGCTACTGTTGCTCAGGGATATGGTATGACTGAAACTTGTGGGATTGTTTCTGTGGAGAATACAAGGTTGGGGATTCGGCATAGTGGCTCTGCGGGAATGCTTGTTGCGGGAGTGGAAGCTCAAATAGTTAGCGTGGATACACTGAAGGCTCTCCCTCCAGGACAATTGGGGGAGATATGGGTGCGGGGTCCTAATATGATGCAAGGATATCACAACAATCCCCAAGCCACAAGATTGACTATAGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGACGAGGATGGGCAACTTTTTGTTGTTGACCGTATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCACCCTGAAATACTTGATGCAGTTGTCATCCCATATCCCGATGCAGAAGCTGGTGAGGTTCCAGTTGCCTATGTCGTTCGCTCACCCAATAGTTCATTGACTGAGGAAGATGTTCAAAAGTTTATTGCTAAGCAGGTAGCACCTTTCAAAAGATTGCGAAGGGTGACATTCATCAATGCTGTTCCTAAGACAGCATCGGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1611 0.5009 MQRSGYGSDGIFRSLRPSIALPKQPNLTLVSHLFNRVAPFPSKHALIDADSSQTLSFAQLKSLTVKVSHGLLRLGVAKNDVVLFLAPNDIRYIVCFLAVTSLGAIVTTVNPAYTAAEVAKQAKDSNPKFVVTVPELWDKLQHLNLPAVFLHSRAHSNATSFDALVHLAGSPTEFPKVDVKQSDTAVLLYSSGTTGLSKGVVLTHGNFVAASLMIGLDDDLAGEMHSVFLCVLPMFHVFGLMVISYSQLQRGSAVVSLKKFEFELVLKTIEKFSVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMEECAKRFPRATVAQGYGMTETCGIVSVENTRLGIRHSGSAGMLVAGVEAQIVSVDTLKALPPGQLGEIWVRGPNMMQGYHNNPQATRLTIDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFIAKQVAPFKRLRRVTFINAVPKTASGKILRRELIEKVRSKI* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1357 536 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 535 - -
Pvu5g1357 536 Gene3D - 434 535 IPR045851 -
Pvu5g1357 536 Pfam AMP-binding enzyme 35 438 IPR000873 -
Pvu5g1357 536 Pfam AMP-binding enzyme C-terminal domain 447 522 IPR025110 -
Pvu5g1357 536 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Pvu5g1357 536 SUPERFAMILY Acetyl-CoA synthetase-like 24 534 - -
Pvu5g1357 536 Gene3D - 9 433 IPR042099 -
Pvu5g1357 536 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 535 - -
Pvu5g1357 536 CDD 4CL 21 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1357 Pvu-Chr5 35684228 35688356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1357 1 536 Monolignol Biosynthesis Gene Families AT4G05160 67.463 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1357 K01904 - gmx:100797843 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1357 5 35684228 35688356 Pvu5g1357 5 35684228 35688356 ECH
Pvu5g1357 5 35684228 35688356 Pvu11g0866 11 8078425 8081905 PCT