Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1348 ATGGATGCAATTCACCAAGACACACTGGCTTACATCAATGATTTTGAGCTGTACGACTTCGTTGACAATCCAAATTTTGATCAGTTCATTAATTTGATCCGAGGGGAGAATGAAGATGCCAACTGTGACTTCGGTTCTGACCTCATCACTGATAGTTTTGTTAACAATCAGCTCTTACCATGCCCTGCATACCCTTTTGATCAGAACAATAACAATGCTGTGAATGTCTATGATCAAAGCTCCACATTTAGCTCCTTTTCATGCTTTGATGGGAATATGAAGGGAGAAGGAGAAAGAGAAGAAGAAGAAGAAGAAGAAGAACATGATGGAGAGAATTCTTCTGAAACAACCACGACAACAACGACCAAGAATGATGATTGCAAACCCAAACTAAAAAATGATAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCCGAATGAAGGAGAAGCTCTACGCATTGCGTTCTTTGGTTCCCAACATAACAAAGATGGACAAGGCCTCCATAATTGGAGACGCAGTAGCATACGTGCATGATCTTCAAGCTCAAGCTAGGAAGCTGAAGGCTGAAGTTGCAGGACTTGAAGCATCCTTATTAGTGTCTGAAAACTATCAAGGATCAATTAACAATCCCAAAAATGTGCAAGCGGCCCGTAATACTCATCCAATCTGCAAGAAGATCATGCAGGTGGAGATGTTGCAAGTGGAGGAAAGAGGGTATTATGCAAAAATAGTTTGCAATAAAGGAGAAGGAGTGGCTGCATCGTTATTCAGGGCTCTTGAGTCTCTTGCAGGCTTTAATGTTCAGAATTCAAACTTGGTTACAGTTTGTAATAGTTTTCAACTTACATTTACATTGAATATAAAAGGATCAGAACCAGAAATTAACCTGCAAAATTTGAAGCTATGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCGTTTTCTGGTTGA 972 0.4084 MDAIHQDTLAYINDFELYDFVDNPNFDQFINLIRGENEDANCDFGSDLITDSFVNNQLLPCPAYPFDQNNNNAVNVYDQSSTFSSFSCFDGNMKGEGEREEEEEEEEHDGENSSETTTTTTTKNDDCKPKLKNDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVAYVHDLQAQARKLKAEVAGLEASLLVSENYQGSINNPKNVQAARNTHPICKKIMQVEMLQVEERGYYAKIVCNKGEGVAASLFRALESLAGFNVQNSNLVTVCNSFQLTFTLNIKGSEPEINLQNLKLWVTGALLNQGFEFVASFSG* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1348 323 MobiDBLite consensus disorder prediction 125 144 - -
Pvu5g1348 323 MobiDBLite consensus disorder prediction 97 111 - -
Pvu5g1348 323 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 319 - -
Pvu5g1348 323 Gene3D - 123 199 IPR036638 GO:0046983
Pvu5g1348 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 206 IPR036638 GO:0046983
Pvu5g1348 323 MobiDBLite consensus disorder prediction 88 144 - -
Pvu5g1348 323 Pfam Helix-loop-helix DNA-binding domain 140 183 IPR011598 GO:0046983
Pvu5g1348 323 SMART finulus 139 188 IPR011598 GO:0046983
Pvu5g1348 323 Coils Coil 179 199 - -
Pvu5g1348 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
Pvu5g1348 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 11 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1348 Pvu-Chr5 35566395 35569369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1348 9 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.050 6.71e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu5g1348 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1348 - - gmx:100805451 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1348 5 35566395 35569369 Pvu5g1348 5 35566395 35569369 ECH
Pvu5g1348 5 35566395 35569369 Pvu11g0885 11 8314224 8315692 PCT