Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1346 ATGGCCACGGAGGAATTTGTCTCATGCAACAACGATCCAACCAACATAGCCAAAGGCAAGCGCACAAAGCGGCGCTTGAGGCCTTTGTCGCCTTGTGTTGTCACCGCCGTCACTGCCACGGCCGCCGCCGCCATGACATCAAGCTGTTCAAGTGCTTCTGGCGGCGGTGGTGGGTCGTTTTCATCAGTCACCCTGGAGGAGGAAGAGGAAGACATGGCCAATTGTTTGATTCTCCTGGCGCAAGGAAGAGGAGGAAGGGACCCTCTTCATCACAAGGAGCTATGTGATGGTGTGAAGACAGAGAAGGGTGGCAACAAAATTGAATTTTATGTTTATGAGTGCAAAACATGCAACAGAACATTCCCTTCGTTTCAAGCACTTGGTGGCCACAGGGCGAGTCACAAGAAGCCCAAGGTTGAGGAAAAGAAATCCCCACCACCGGCGTTGCCGCCACCGCCACCGTCTTCCTCGTCGCAACTATTTAATTTCGAAGAAACAAAACAGAATCACATGAAGATTAGCCCTTCAGTGTCGCTTCAATTAGGGTGTGGAAACAATAGGGGTGGTTTGAATTTCCATGGAAACAAGTCCAAGATTCACGAGTGTTCCATTTGTGGGTCAGAATTCACATCAGGACAAGCATTGGGTGGTCACATGAGGAGGCATAGGTCATCTAACAACAATAATACTAATACTAATACTGTTGTTCAGACAACAACAACAACAACTTCTGATGGTGCTGTTGAAGTTAAGCCTCGGAATGTTCTAGAATTAGATCTCAACCTGCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAGTTTCCGGGGAATCCGAATTCCATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAG 891 0.4927 MATEEFVSCNNDPTNIAKGKRTKRRLRPLSPCVVTAVTATAAAAMTSSCSSASGGGGGSFSSVTLEEEEEDMANCLILLAQGRGGRDPLHHKELCDGVKTEKGGNKIEFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSPPPALPPPPPSSSSQLFNFEETKQNHMKISPSVSLQLGCGNNRGGLNFHGNKSKIHECSICGSEFTSGQALGGHMRRHRSSNNNNTNTNTVVQTTTTTTSDGAVEVKPRNVLELDLNLPAPEDDLRDSKFQFPGNPNSMMLSAAPALVGCHY* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1346 296 PANTHER ZINC FINGER PROTEIN ZAT5 1 296 - -
Pvu5g1346 296 SMART c2h2final6 200 222 IPR013087 -
Pvu5g1346 296 SMART c2h2final6 112 134 IPR013087 -
Pvu5g1346 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Pvu5g1346 296 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Pvu5g1346 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 227 IPR013087 -
Pvu5g1346 296 MobiDBLite consensus disorder prediction 128 160 - -
Pvu5g1346 296 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 296 - -
Pvu5g1346 296 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Pvu5g1346 296 Pfam C2H2-type zinc finger 200 224 - -
Pvu5g1346 296 Pfam C2H2-type zinc finger 111 137 - -
Pvu5g1346 296 Gene3D Classic Zinc Finger 109 222 - -
Pvu5g1346 296 SUPERFAMILY beta-beta-alpha zinc fingers 111 222 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1346 Pvu-Chr5 35542895 35543785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1346 11 296 C2H2 Transcription Factor Family AT2G28200 43.421 1.25e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g1346 zf-C2H2_6 2.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1346 - - gmx:100788646 412.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1346 5 35542895 35543785 Pvu5g1346 5 35542895 35543785 ECH
Pvu5g1346 5 35542895 35543785 Pvu1g1877 1 44582723 44583794 ECH
Pvu5g1346 5 35542895 35543785 Pvu11g0887 11 8345523 8347015 ECH
Pvu1g1877 1 44582723 44583794 Pvu5g1346 5 35542895 35543785 ECH
Pvu7g1560 7 37352490 37353705 Pvu5g1346 5 35542895 35543785 ECH
Pvu5g1346 5 35542895 35543785 Pvu11g0887 11 8345523 8347015 PCT