Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1344 ATGATTTCAAGGGCCACATCTAGCTTCCAAAATCATCAAGGGCTTCGGATGTTCTCTGACCCAGAAGATTTGGTGTCACCCTCTGTGGAGTCTGCCTCAGCTTCACACTCCAGTACCCTCCTCTTCAATCTCTCTATTCTGAAGGACAAGGTTGGTGAGGTGCAGACCCTAGTAGGTGTTATTCTCTCCCCAAATGAAAGCCTACCCGAGTCAACTTCCATGGCCATATCCAGCATGAACTCCACAATCCAAGAAATCATAGTCACTGCCACATCAATGATGCTCACCTGCCAACAGATGGCTCTCACCACTACCCCTTCAGGTACTAATGATACTAATACATGCACCAACAAATTGCACCAGCTGAACAAGTTATTGCCTCACTCAAATTTTGGCACAAATAGAAGTGTGCTTGGTAACATAGGCATAGATATCAGTGACCATCATCAGGGTTTGTTTTCTAGCACTGAGTCAGAGGCACTGGACTGGTTTAGTGAAAGCTATAACAATAACGAGGATAATAGCAATATTATTAGTAAGACTAAGGAAGATGATCCAAGCGTTGTAGTTAGTGAAAACAATATGATTATTAGTAGAGGTGGAGAAGAACATGAACCTAACGAAGAGTGGTATAATCATAGAGGGCTTTCACCAAAGAATAGTGATATAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTACACGCACTATTGCCAAGTTTGTGGCAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACCAATGCTGCATTAAGCAACCCAATTAAGAATATGGGGAAGTTAGAAGGGGAAAGCGAGATTTTGATGAGCCTGAAGCCAAAGAGATATTCGTGTCCTCAAGAAGGGTGTAGGTGGAACCGAAAGCATGCCAAGTTCCAGCCATTGAAGTCTATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGATGCAACCAGAAGCAGTTCTCTGTGCTCTCTGATCTGAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGCTCGTGTGGCACTTCGTTTTCTAGGAAAGACAAACTCATGGGCCATGTTGCTTTGTTCGTGGGGCACCAACCAGCTATCACCAATATTGCTCTCTCATCATACTCAGCAAAATTGGAGCAGCACACATTGCAAATGCAGATTGATGGTAGCTCAAGATGA 1245 0.441 MISRATSSFQNHQGLRMFSDPEDLVSPSVESASASHSSTLLFNLSILKDKVGEVQTLVGVILSPNESLPESTSMAISSMNSTIQEIIVTATSMMLTCQQMALTTTPSGTNDTNTCTNKLHQLNKLLPHSNFGTNRSVLGNIGIDISDHHQGLFSSTESEALDWFSESYNNNEDNSNIISKTKEDDPSVVVSENNMIISRGGEEHEPNEEWYNHRGLSPKNSDIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNMGKLEGESEILMSLKPKRYSCPQEGCRWNRKHAKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVALFVGHQPAITNIALSSYSAKLEQHTLQMQIDGSSR* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1344 414 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 3 396 IPR044300 GO:0010044|GO:0010447
Pvu5g1344 414 Gene3D Classic Zinc Finger 330 380 - -
Pvu5g1344 414 PANTHER OS08G0562300 PROTEIN 3 396 - -
Pvu5g1344 414 Gene3D Classic Zinc Finger 231 287 - -
Pvu5g1344 414 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Pvu5g1344 414 SUPERFAMILY beta-beta-alpha zinc fingers 235 262 IPR036236 -
Pvu5g1344 414 SMART c2h2final6 332 354 IPR013087 -
Pvu5g1344 414 SMART c2h2final6 294 327 IPR013087 -
Pvu5g1344 414 SMART c2h2final6 237 259 IPR013087 -
Pvu5g1344 414 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1344 Pvu-Chr5 35532409 35533653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1344 37 387 C2H2 Transcription Factor Family AT5G22890 47.645 1.30e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g1344 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1344 - - gsj:114375424 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1344 5 35532409 35533653 Pvu5g1344 5 35532409 35533653 ECH
Pvu5g1344 5 35532409 35533653 Pvu11g0889 11 8366284 8367709 PCT