Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1341 ATGGCCAAGGGCACCGATTCCGACGAGTTCGTCTTGCTTTCTACGGTTCGGACTGGTCTGAAGAGGGAGTTCGCGTTCGCAATGAAGGCCCAATCTGAGATCTGCGGCGCTTCTCTGGGCCGAACGCGGGCCAGCAAGAACCGGCCCCACCCTCCTGTTCAGTCCACATCTTCCCGGAAACGGCCAAGGAAGACCGTGGAGCAGAAAGCGTCGGAGGACGTCTTGAGCGAGGAAGAGGCTAAGAGCGACGTTGTGGATCTTCAGAGCGACGATGAACCGAAGAATAATCACGCGGGAGAATCAGAGTCTGCGGCAATGTTGGTTTGTGAAGAGGAAACAAAGAGTGATGTGGCAGTGGAAAATATTATCAGCGAAGAGGAGCCGAAGGTGTTGGAAACTGTTATCAGCGAAGAGGAGCCGAAGGTGTTGGAAACTATAATCAGCGAAGAGGAGCCGAAGGCGTTGGAAACTATAATCAGCGAAGAGGAGCCGAAGGCGTTGGAAACTATAATCAGCGAAGAGGAGCCGAAGGTGTTGGAAACTATAATCAGCGAAGAGGAGCCGAAGGTGTTGGAAACTATAATCAGCGAAAAGGAGCCTGTTGTGGCTGAGACGTTGAAGGAAGAGGTTGTGGATGAGATGGCACAACCTCTTGGCGAAATTAACGAGGAATCGGAGAAGGGTGTTTTGGGAGGTAAGGTACCTAGTGGGGAAACCCTTGTTTTGGAGGATAATGACGACAAGGGGAAGAAGAGGAAGAGAATGAAAAAGCGGTTGGAGAGGCCTCAGACTGTGAGAAGGTTTACGCGGTCGTTATTGAAGGAAAAACCCGAGGAAACAAATGATGAGAAACATGTTGGTGCGGTTGGACTTGATGATGCTATTAAGAGGGAATCAGAAACTGAGGCTTCGGTGTTAATGACCACTCCTAGTTCGGGAAGATTTTCGAATTCTAGGTTGAGGAAGTTTCCTACCAAGTTGAAGGATCTTCTGGCTACGGGGATTCTTGACGGATTGACAGTGAGGTACATGAAGGGATCAAAGGCACGAAAAAATGGAGAAACAGGGCTTCAAGGAGTGATTCAAAACTCTGGGGTTCTGTGCTTTTGTGATAGTTGCAAGGGGGTTGAGGTTGTCTCACCCTCTGTGTTTGAGCTGCATGCTGGCAGTGCAAATAAACGTCCCCCAGAGTACATTTACATGGATAATGGGATTAGTGGATGTAACCTCCGTGATGTCATAAATGCCTGCTGCGATTTGCCATTGGAGTCAATGGAGGAAGCCGTCCAAAAACTTCTTGCTGGCTTCACTATGAACAAATCTTCCATCTGTTTGAACTGCCGAGGAGCATGCAAGGGTGTGTCAAAGCTAGTATGTGATTCTTGCATATCAAGCCCCCCTCAAACAGCCACAGTTAGTAGCAAAAAGATTTCATCACTAGTTGAACCAAGATCACCAGAGCCAGTAACGGTTAAAAAATCATTAGACTACGAGATGCATCCAAATTCATTAGAAAATACGGTGCAGCCAAACTTACTAAATAATGGTGTGCCGCCAAGCTCATTAAACAATGAGATGATGCCAAATTCGTTAAATAGTGTGGTGAAGCCTAATTCATCAAACAGTGCGATGAAGCCAAATTCGTTAAAGAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTACGCTTGCATAAATTGGTATTTGAAGGAGATGTTTTGCCAGATGGAACTGAAGTAGCCTACTATGCTCATGGACAGAAACTGTTGGTTGGTTACAAAAAAGGATATGCAATTTTTTGTACCTGCTGCAACTCTGAGGTCAGTGCTTCTCAGTTTGAAGCTCATGCTGGTTGGGCATCACGAAGAAAGCCTTACCTGCACATCTACACATCTAATGGAATCTCACTCCATGAGTTGTCCATCTCTTTATCTAAAGATCGGAGGTTTTCCAACAATGATAATGATGATCTCTGCATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGACTGTGTCCCTTTACCATGCATTCCTACTGGTACTTGGTATTGTAAGTATTGCCAGAATATTTTCCAAAAAGATAGGCAGGGGCAACATAATGTGAATGCTCTGGCAGCTGGAAGGATTGAAGGCACTGATATTTTGGAACAGATGAACCCCAGATGTATTCGTGTTGTCAAAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCACAATTTCAGTAAAAGCTTTGGTCCTCGGACAGTAATTATTTGTGATCAGTGTGAGAAAGAATATCATGTTGGATGTTTGAAGGATCATAACATGCAGAACCTTGAGGAATTGCCTGAGGGGAATTGGTTTTGTAGCACAGCTTGCAATCAAATTCATTCTGCTCTGGTGGATTTGGCGGCATGTGGCGAAAAGAGTATCCCAGATTCCCTTCTAAGTTTGATAAAAAAGAAACATGAAGAGAAAAGTGTAGACATTGGTGGAGGTGGCCTTGATGTTAAATGGAGGGTTATAAATTGGAAACTAGATGATTCTGTTGAAAATAGGAAAAGGCTTTCAAAGGCTGTTGCTATCTTCCATGAAAGGTTTGATCCTATAGTCGATTCAACATCTGGCCGAGATTTCATTCCGACAATGTTGTTTGGAAGGAACATTCGGGGTCAAGATTTTAGTGGAATGTACTGTGCAGTGCTTACTGTCAATGGAGATATTGTGTGCGCCGGAGTATTTCGTGTGTTTGGGTCAGAAATTGCAGAGCTTCCATTGGTGGCAACAACTTCTGATCAACAAGGACAGGGTTATTTTCAGTGTCTATTTTCTTGTATTGAGACATTACTTGGATCTTTGAATGTGAAAAACCTTGTCCTACCAGCTGCTGATGAAGCTGAATCGATATGGACCGGTAAATTTGGGTTTACTAAGCTAGCTCTAGATGAGATAAACAAGTATAAGAAATTTTATCGGATGATGATATTTCAAGGGACCTCGGTGTTACATAAGCCTGTTCCTGCACTATGA 3081 0.4453 MAKGTDSDEFVLLSTVRTGLKREFAFAMKAQSEICGASLGRTRASKNRPHPPVQSTSSRKRPRKTVEQKASEDVLSEEEAKSDVVDLQSDDEPKNNHAGESESAAMLVCEEETKSDVAVENIISEEEPKVLETVISEEEPKVLETIISEEEPKALETIISEEEPKALETIISEEEPKVLETIISEEEPKVLETIISEKEPVVAETLKEEVVDEMAQPLGEINEESEKGVLGGKVPSGETLVLEDNDDKGKKRKRMKKRLERPQTVRRFTRSLLKEKPEETNDEKHVGAVGLDDAIKRESETEASVLMTTPSSGRFSNSRLRKFPTKLKDLLATGILDGLTVRYMKGSKARKNGETGLQGVIQNSGVLCFCDSCKGVEVVSPSVFELHAGSANKRPPEYIYMDNGISGCNLRDVINACCDLPLESMEEAVQKLLAGFTMNKSSICLNCRGACKGVSKLVCDSCISSPPQTATVSSKKISSLVEPRSPEPVTVKKSLDYEMHPNSLENTVQPNLLNNGVPPSSLNNEMMPNSLNSVVKPNSSNSAMKPNSLKNGMKHSASRGKSQGRLTRKDLRLHKLVFEGDVLPDGTEVAYYAHGQKLLVGYKKGYAIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPTGTWYCKYCQNIFQKDRQGQHNVNALAAGRIEGTDILEQMNPRCIRVVKTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCSTACNQIHSALVDLAACGEKSIPDSLLSLIKKKHEEKSVDIGGGGLDVKWRVINWKLDDSVENRKRLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGMYCAVLTVNGDIVCAGVFRVFGSEIAELPLVATTSDQQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLALDEINKYKKFYRMMIFQGTSVLHKPVPAL* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1341 1026 MobiDBLite consensus disorder prediction 226 260 - -
Pvu5g1341 1026 SMART PHD_3 755 810 IPR001965 -
Pvu5g1341 1026 SMART PHD_3 667 708 IPR001965 -
Pvu5g1341 1026 ProSiteProfiles Zinc finger PHD-type profile. 665 710 IPR019787 -
Pvu5g1341 1026 MobiDBLite consensus disorder prediction 60 98 - -
Pvu5g1341 1026 PANTHER AUTOIMMUNE REGULATOR 1 1022 - -
Pvu5g1341 1026 PANTHER AUTOIMMUNE REGULATOR 1 1022 - -
Pvu5g1341 1026 MobiDBLite consensus disorder prediction 38 105 - -
Pvu5g1341 1026 ProSitePatterns Zinc finger PHD-type signature. 668 707 IPR019786 -
Pvu5g1341 1026 Gene3D - 853 1021 - -
Pvu5g1341 1026 Pfam Tify domain binding domain 359 406 IPR032308 -
Pvu5g1341 1026 Pfam Tify domain binding domain 602 649 IPR032308 -
Pvu5g1341 1026 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 654 743 IPR013083 -
Pvu5g1341 1026 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 912 996 IPR016181 -
Pvu5g1341 1026 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 750 813 IPR013083 -
Pvu5g1341 1026 MobiDBLite consensus disorder prediction 465 487 - -
Pvu5g1341 1026 CDD PHD1_AIRE 667 707 - -
Pvu5g1341 1026 SUPERFAMILY FYVE/PHD zinc finger 655 710 IPR011011 -
Pvu5g1341 1026 MobiDBLite consensus disorder prediction 465 480 - -
Pvu5g1341 1026 MobiDBLite consensus disorder prediction 536 560 - -
Pvu5g1341 1026 SUPERFAMILY FYVE/PHD zinc finger 748 809 IPR011011 -
Pvu5g1341 1026 MobiDBLite consensus disorder prediction 536 565 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1341 Pvu-Chr5 35509486 35517728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1341 204 1023 PHD Transcription Factor Family AT2G36720 42.538 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1341 - - var:108333944 1732.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1341 5 35509486 35517728 Pvu5g1341 5 35509486 35517728 ECH
Pvu5g1341 5 35509486 35517728 Pvu11g0894 11 8415538 8421404 PCT