Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1340 ATGGCTGTTGCTGGTGTGCATAATGTGACTGCGCTCGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCGTCTGGGAGGCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCGTCTTCGGTCTTGCAAATGTGGAGAGAGATTGAGGATGAGCAGGTAGGAAGACCAGTCCAGGGAAGACCTGGGGAGGTTTTACTTCAACAAAGGAGTGATGAGTTGGTTGTGGACCCCTCACATGAAGATATGCCATATAGCAACCAGAGAGAAGGGCATGTGATAGAGGATGCAGGCTTTGGTGAGAATGATTCTGAGACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACATGAGGAATTGAACAATTCTAGCCACGAAAACTCCTCTGATTTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAGTGGATGAATAGTGGTTCTAGGGATCGTGCATCGAATAATTCCCAAGGAAACAGGGGAGAATGGCGCGGGGAAACTGAGCAGGAAAGGGGCGGGGAAACTGAGCAGGTAAGGGTGAGTATAAGGGAGTGGGTACAGATGAGTAGCCAGCAGAGAGGTGTTTCTTCTGGGGAAAATCGGGACGAACAATCTTCTGAAACTGGTACCCAAATTGATTGTGTTCGTGATGGATTTGTTAATCAGAACGAGGGCCAAACTGAGCATACACGGAGGGGAATCCGTAAATTATGTGGCCGACAGGTGCTGCTTGACATGCTTAAGAAGGCTCAGATGGAAAGGCAAAGAGAAGTTCAGGAATTGTTGGACCACCGGGCTGTATCTCATTTCCCCCATCGTAATCGTATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGATAATAACAGATCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAGAAGCAGACTGTATCAGGTCTAAGGGAAGGATTCTTTTTTAGAAAGGACAATATTGGTTGTAGTCAAGCAACCAGTAACCTATCTGATATCTCTTCCGAGAGTGATATAGATGTTAATGCAATTGAACAAACTGGAGCTAGCAGTTCACAAGCAGTCCCAACTGTACATTCAGAACAATCTGGGCCTAATAACAATGGAAATGACGGAATTGAGATACCATGTGATCAGATTTGTTCACAAGGAACCCCTTGTGAGATATTAGACTGGCAAGGCTCTGCCGCTCATATAGAAACAAGAGATTGGGAATCATCTTCCAGTATGAGGGTTGAAAGAGGAGATGGCACTGGACAAACTGTTGCTACGATGACAACTGAAGATCCTTCTAACGACCTTACCCAACACAGCTTGCAAATTGAAGATACACAGGATGACAATATGCAAGAGTTAAGCGAGGTACATACTGAGCAATCTCAGTGGGGAGATATAACTAATGATGAAAGCAATTTATCAAATCAGGATGATCGTGTATATAGCAATATCGTTGGTGATGTAGATTTGATTGAATCTATTGCTCTGGAAGTAGAACAACAGGAAGAAGTTATAATTGAAAATGACGGAAGTGACTGGCATCAAAGTGTGGATGATCATCAGCTCAGTAACACAACAAATGAATGGCCCCAAAACATATTGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAACCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAATGAAGTAGCTCCAGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAGTCGTATGTTGAAAGGCAAGGTCACGCTAATGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCCTGGCAGAACAAGACTCAGGGCAACAGACTAGGGACCCAGTCGTTGGTCCTCAGAGTATTGTTAATAGCTCACTTGACCACCGCCCCTTGCCACCAACACCTCCGCCTCAACCTTTATGGGATCGGCACTCTCGTCATGACAATTGGTCACAGAGTGACATAAATAATCAGCGCTTAGGAATTGTGCGTTCATTTGCGGGACATAACTGCTTTTCTTTAGCTGATGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAACAAAGGATGAATAATATGCAAAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCAGCCTTGAATCGTTCAACTGGTTCATCAGGAATACATGACCGTGTTTCACCAGACGATAAATCTAAATGGGAATGTGTGAGGAAGGGACTTTGTTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGCCACATGTGCACATGTTCAAAATGTGCAAATGATTTGCACCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAG 2577 0.442 MAVAGVHNVTALESTFLRESLSQSSGRQGDGGRGGTRSSSVLQMWREIEDEQVGRPVQGRPGEVLLQQRSDELVVDPSHEDMPYSNQREGHVIEDAGFGENDSETWSQSQNEFHDEHEELNNSSHENSSDFGEVERERVRQIFREWMNSGSRDRASNNSQGNRGEWRGETEQERGGETEQVRVSIREWVQMSSQQRGVSSGENRDEQSSETGTQIDCVRDGFVNQNEGQTEHTRRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRAVSHFPHRNRIQALLRGRFLRNDRSIDNNRSTSIAESELGLLRQKQTVSGLREGFFFRKDNIGCSQATSNLSDISSESDIDVNAIEQTGASSSQAVPTVHSEQSGPNNNGNDGIEIPCDQICSQGTPCEILDWQGSAAHIETRDWESSSSMRVERGDGTGQTVATMTTEDPSNDLTQHSLQIEDTQDDNMQELSEVHTEQSQWGDITNDESNLSNQDDRVYSNIVGDVDLIESIALEVEQQEEVIIENDGSDWHQSVDDHQLSNTTNEWPQNILGSEDGENSRMQEQETPEVWQEDGGFQEAVEIWLGGPSDNEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHANVEWELQETTPSSPLAEQDSGQQTRDPVVGPQSIVNSSLDHRPLPPTPPPQPLWDRHSRHDNWSQSDINNQRLGIVRSFAGHNCFSLADEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSTGSSGIHDRVSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLHQSRRKCPMCQAPVVEVIRAYSIQ* 859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1340 858 MobiDBLite consensus disorder prediction 185 216 - -
Pvu5g1340 858 ProSiteProfiles Zinc finger RING-type profile. 806 845 IPR001841 -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 150 165 - -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 420 442 - -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 166 181 - -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 19 45 - -
Pvu5g1340 858 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 787 856 IPR013083 -
Pvu5g1340 858 SUPERFAMILY RING/U-box 805 851 - -
Pvu5g1340 858 Pfam Zinc finger, C3HC4 type (RING finger) 803 850 - -
Pvu5g1340 858 PANTHER PROTEIN, PUTATIVE-RELATED 1 858 - -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 357 380 - -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 409 442 - -
Pvu5g1340 858 Coils Coil 734 761 - -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 19 85 - -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 649 680 - -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 649 702 - -
Pvu5g1340 858 CDD mRING-HC-C3HC5_NEU1 806 844 - -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 97 135 - -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 147 216 - -
Pvu5g1340 858 MobiDBLite consensus disorder prediction 109 135 - -
Pvu5g1340 858 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 858 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1340 Pvu-Chr5 35481978 35487486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1340 806 852 C3H Transcription Factor Family AT3G06140 38.298 3.68e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1340 - - vun:114184870 1519.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1340 5 35481978 35487486 Pvu5g1340 5 35481978 35487486 ECH
Pvu5g1340 5 35481978 35487486 Pvu11g0895 11 8441784 8446971 PCT