Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1331 ATGGCGGAGGACCGGACTGAGGTGAGTGATTACAGTTCGGAGGACGAAGGAACTGAAGATTACAGGCGCGGAGGGTACCATGCGGTTCGGATTGGTGACACTTTCAAGAATGGGTGGTATGTGGTGCAGAGCAAGCTTGGTTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGACACTAACAAATCGCGATATGTTGCCTTAAAAATTCAAAAGAGTGCTCAGCATTACACTGAAGCGGCAATGGACGAGATAAAGATTCTCAAACAAATTGCTGATGGGGATCCAGATGACAAAAAATGCGTTGTAAAGCTTTTGGATCACTTTAAGCACTCAGGACCTAATGGCCAGCATGTTTGCATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACCCTTATCAAGTATAGTGATTACCGAGGTATTCCCATTCCTATGGTCAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCACCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCTGAGAATGTCCTGCTTCTGTCTCCCATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACGAAGGATAAGACTGTCACAAAAAATGGGACAACAATAGCCAGTAAGAGTGTGAATGGAGATCTGACCAAGAACCAGAAAAAGAAATTGCGAAAAAAGGCTAAAAAGGCAGCCCAGGGCTGTGTTGGAAGGGAACATGCCGAGGAAGCTGAGGAGGATTCCAAAGCACCCGATGAGCAAGATGATTGTAGTAATGATGTGAAACCAAGTGTAGAATCTGGTGACAATAAACCTAATAGTCCTCTTAGTAAAGATGAATCCACAAAGACTTCTGAAAATAAGGATGTTCCTCAAGGAAGTCATGGTCAGAGAAGAGGTAGCCGCACTACAAGAAAGAAGTTGCTTGAATCTGTCAATCTTAAGTGCAAGCTGGTTGATTTTGGTAACGCTTGTTGGACCTATAAGCAATTCACAAATGATATTCAGACAAGGCAGTACAGGTGTCCTGAAGTTCTTCTTGGATCTAAGTACTCAACTCCAGCAGACCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCTCTGGCGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGATAGGGATGAGGATCATCTAGCGTTGATGATGGAGCTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGGCGCTATTCCCGAGATTTTTTCAATAGATATGGCGATTTGAGACACATCCGTCGATTGCGTTTCTGGCCTCTTAATAAGGTGATGATGGAGAAGTATGATTTCAGTGAAGAAGATGCAAGTAGCATGGCTGACTTCCTTCTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCAACTGCTGCAGTCTGCCTTCAGCATCCATGGTTCAGTGCTGGTCCCCGGACTCTTGAGCCCTCAGTGGCTAATGTGCAGCATGCTGGAATTGATGAGGAAATATCTGAAAAGATGCAGAGGGAAAAAGCTGGGCATGAGGCTGTGGAAGTTGGTATGGGGAATATGGCCATAGATGGAAATTCAAAGCAACTCTAA 1608 0.4415 MAEDRTEVSDYSSEDEGTEDYRRGGYHAVRIGDTFKNGWYVVQSKLGWGHFSTVWLAWDTNKSRYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGIPIPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNTKDKTVTKNGTTIASKSVNGDLTKNQKKKLRKKAKKAAQGCVGREHAEEAEEDSKAPDEQDDCSNDVKPSVESGDNKPNSPLSKDESTKTSENKDVPQGSHGQRRGSRTTRKKLLESVNLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELASGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVMMEKYDFSEEDASSMADFLLPLLDFVPEKRPTAAVCLQHPWFSAGPRTLEPSVANVQHAGIDEEISEKMQREKAGHEAVEVGMGNMAIDGNSKQL* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1331 535 MobiDBLite consensus disorder prediction 202 221 - -
Pvu5g1331 535 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Pvu5g1331 535 SUPERFAMILY Protein kinase-like (PK-like) 35 491 IPR011009 -
Pvu5g1331 535 CDD STKc_SRPK 29 482 - -
Pvu5g1331 535 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 534 - -
Pvu5g1331 535 SMART serkin_6 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1331 535 MobiDBLite consensus disorder prediction 183 310 - -
Pvu5g1331 535 MobiDBLite consensus disorder prediction 269 286 - -
Pvu5g1331 535 Pfam Protein kinase domain 319 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1331 535 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1331 535 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Pvu5g1331 535 PANTHER SERINE KINASE-LIKE PROTEIN 8 534 - -
Pvu5g1331 535 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Pvu5g1331 535 Gene3D Transferase(Phosphotransferase) domain 1 123 483 - -
Pvu5g1331 535 ProSiteProfiles Protein kinase domain profile. 40 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1331 535 MobiDBLite consensus disorder prediction 238 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1331 Pvu-Chr5 35346707 35352064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1331 6 534 EF-hand Containing Proteins AT5G22840 69.231 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Pvu5g1331 Pkinase 1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1331 K08832 - gmx:100791829 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1331 5 35346707 35352064 Pvu5g1331 5 35346707 35352064 ECH
Pvu5g1331 5 35346707 35352064 Pvu11g0909 11 8632680 8636990 PCT