Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1323 ATGGAACCTCCTGTAGTGAGATCTAGGGGTCGCCCGCGCAAACGCAGAAGAGAAGAGGACGGAACCGTCGCCGGCGATCCGAAAGCGTTTCCTGAGGCAAATAAGTTGCCTCCGGTTGCACTGGTTGGTCGATACGTGCTGAAAGAGTTCCGCAGGAACACGGTTCTTCTCGGCAAAGTCGTACGTTACGAGCGCGGATTGTACAGAGTCGTGTACGAGAGTGGCGGATTTGAGGATTTAGATAGCAGCTTGATTCGTAGGATACTTCTCCTTGATAGCTATTTTGACGATGATTTGATTAGGAGGAAAGGCGAATTGGAGGAATTGGTGTTGCCGAAAATCGCGGAGGAACGGGAGAGAGGTTCCAGCGAATTGCAAGACGATTTAATGGTTGAGAACGAAGAGGAACTAGATGAAACTGACGATGAGTCGTGCGGCGAGGCCAGGATTTTGAGTTCCGATGCTGAAACGCCAATTCCGTCTCCTCCAACGCTGCCGCCGTCTTCAGGAACAATTGGCGTTCCGGAATCGTGCGTTTTGAATCTCCTCTCAGTGTACGGATTCTTGCGGTCGTTTAGCATTCGTCTGTTTCTCAGTCCTTTTACTTTGGACGAGTTTGTAGGTGCTTTGAACTGTAAAGTTTCGAACACGTTGCTTGATGCTATTCACATTTCGCTGATGCGTGTTTTGAGACGTCACCTTGAAAACATTTCAACAGATGGCTCGCGGCGTGCAATAAAATGCCTTAGGTGCATTGATTGGCGTTTGCTTGATGCTTTGACTTGGCCTGTTTTTGTGTTTCAATATCTAGCAATTTATGGTTACACAAAGGGACCTGATTGGAAAGGATTTTATGACGAAATCTTTTATGGTGAGTACTATTTATTGCCTGCAAGTAGGAAACTGATGATTTTGCAAATTCTCTGTGATGATGCTTTGGCATCTGAGGAGTTTAAAGCTGAAATGAGCATGCGTGAAGAATCAGAGGTTGGGATTGATTACGATAATGAAGATAGCCTTCCTACTGAAATTGGGCCCAGAAGAGTTCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATAGTGAAACTCAGAAGTATGTTTCAGAATTGAATGCTGAGGATGTTGATGGAAATGGAGATGAATGCCGCTTATGTGGCATGGATGGAACTTTGCTTTGCTGTGATGGTTGTCCTGCTGTTTATCATTCTAGGTGTATTGGTGTGATGAAGATGCATATACCAGACGGGGAATGGTATTGTCCAGAGTGCAAAATAAATATGATTGGGCCTACAATTGCACGGGGAACATCACTTAAAGGGGCTGAAGTATTTGGAAGGGATTTGTATGGGCAAGTTTTCATGGGTACTTGCGACCACTTACTGGTGCTCAGTGTCAACAGAGATGAATTTTGTCTTAAGTACTACAGTCAGAATGATATTCCTGAAGTTCTTCAAGTCCTCTATGCATCCGAGAAACTTAGACCTATATACAATGGTATTTGCATGGCAATTTTAGAATATTGGAAAATTCCAGAAAACTTCGTATCCATTTGTGTCACAAGTGTACCACAAATAAACTTAACAAATTCGAACACAGAAGTGAAGGCAGAATACAGTTTAACATTTGCAAATGGAATTTGTGGTGATAATTTGGAACCATCTCTTGATGGTTCTTTGGTTACAACTTGTGGTCCTGCTCCAAAGTATGAAGATTCTTTTAACAAGTCAGCTGCAGTTGGCCCTGCTAAGTTCTCCTTTGTAAGCAGCCAGTTTAATAATTATGGGCACGCAAATGACATAAAGTTGCCTATGAATTTGTCTTTGCAAGCTAAAGGTGACCAATCTGCTTTTGGAAAGTGCAAAGGCAGTTTTACTAATGATTTTGTGTACACTGGTTCCTCCTATAAACCACAGTCATACATTAATTGCTATATGCACGGTGATTTTGCGGCATCCGCCGCTGCTAACCTGGCCGTTCTTTCTTCAGAGGATTCTAGATCAGTGGGTCATGTGTCTGATAACTTGGGGAAAGCAACATCTGGAAACACTTATTTACTTGCAAAAGCATTCTCCCAAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTAGAGGTTCCAAGAGAGAGGTGTGGCTGGTGCCTTTCTTGTAAAGCCCTTATTTCAAGCAAGAAAGGATGTATGTTGAATCATGCTGCTCTAAGTGCCACCAAAAATGCAATGAAAATCCTTTCTGGTCTTGCTCCTGTCAGGATTGGAGAAGGAATCATCCCTAGCATTGCAACTTATGTTATATATATAGAGGAAAGTTTACGTGGTTTAATAGTTGGGCCCTTTTTAAGTGAATGTTATAGAAGGCATTGGCGTAAACAAGTGGAACGAGCCACATCATTCAGTGATATAAAACCCCTTTTACTCAAACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGGTGAAGTTGATGGATGATTGGTTGGCGGAATTTTCTACAATTCAAAGTGCTGCAGTAACTCTTGGAACTACACAGAAACGCGCGACATGTGGGAGGCGTAAGAAACAGTTATCTATCAATAAAGTTACAGCTGGTGCTTGTCCTGAAAATTTTACATGGTGGCATGGTGCGAAATTTTCCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGCCAGAAAAGCAGCTCGACAAGGTGGTTTTAGGAAAATTTTGGGTATATTATATGCTGACGGCTCTGAGATTCCTAAAAGAAGCAGACAGGTTGTTTGGAGGGCTGCAGTACAAATGAGTAGGAATGCATCCCAGTTGGCCCTTCAGGTCCGTTATCTAGATTTTCATGTCAGATGGAGTGATCTGATTCGTCCTGAGCATAACCTCCTAGATGTGAAAGGTCAAGATACCGAAGCATCTGCTTTTAGGAATGCAAATATTCATGAAAAAAGAGTTGTAGAGGACAAAATTTTATATAGAGTAGCCTTTGGAAGCCAAAAACATCTTCCTTCTCGGGTAATGAAACATGTTGAAATAGAGCAAGGTCCTGAAGGAAAGGAAAAATATTGGTTTTCTGAAAAACGCATTCCTTTATATTTGGTAAAAGAGTATGAAATGCGCAATGGAAAAAGGCTATCTGATGAAGAGTACCTGTACATCACATCTCAGTTGCACCGAAGGCAGTTGAAAGCTACCTACAAGGACATTTTTTTTTACCTTACCTGCAAGAGAGACAAATTGAACATGTTATCATGCTCTGTTTGTCAGCTGGGTGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACGGGTTGTTCAGTGAGTTCAACTGTCTCTACGTGTGAAGAAGTTGAGTTCTTGGCCACATGCAAACAATGTCATCATGCCAAATTACTTACTCAAAAAGTGTCTTGTAACGAGTCTCCAACTAGTCCCTTGCTCTTAGAAGGACAAGAACAAAGCACTTCAGCAGTTCTGAAGGGACCGGGGCCTAAATGTGATGGTCAAGGATTGATGTCTTCTAGGACAAAGAATAGTCGATCTGACATGAAACGAGTTGCTTCTGATTTCCCTTCGGAAACAAAAGGCCGTAGCAGAAGTTGTTCTTGGGGTATTATATGGAAAAAGAAGAACAACGAAGATACAGGCTTTGATTTCAGGCTCAAGAACATTCTTCTAAAAGGAGGTTCAGGCCTGCCTCAACTGGAGCCTGTTTGTCGCTTGTGCCAAAAACCATATAAGTCTGATCTAATGTATATCTGTTGTGAAACATGTAAACATTGGTACCATGCTGAAGCTGTCGAACTTGAAGAGTCCAAACTTTTTGATGTTCTGGGCTTCAAATGTTGTAAGTGTCGCAGGATAAAGTCGCCTTTATGTCCTTTCTCTGATTTGAGTTACAAGACTCAAGAGGGCAAGAAGTCTTCAAGGGATTCAAAGAAAGAGTACTTCGGGGGAGATTCTGATTCTGGTACACCTATTGACAGGAGAACGTATGAGCCTGCAACTCCTATCTATCCTGCAGTGGATGTCTCTAGACAAGACAATGATCCTCTGCTGTTCTCCCTTTCAAGTGTTGAGCTGATTACAGAACCTGAGTTAGATGCAAAGGGTGTGGACAATACTGTCTCTGGGCCAGGACTTGGGAAGTCATCTAAACGTGAGAGGGAGAATAATGGTTCTTTTAGAGGTAATCTTCATGCTGAGTTCTCAACCAGCAATGAAATGGTTTCCAAATCAGTAAAAGATTTATCTCCTGTAGAACATGTCTCTACTGACTGCAGTCTTCTGAAGGACCCCGAAATTGTAAATTATGATGAGTTGGTGGATTTTGAACCTCATACCTACTTCTCTCTGACTGAACTTCTCCACTCAGATGAGAATATTCAATCTGAGGAAGCTAATGCGTCTCGGGTCTTCTCGGGGTGTTTGACAAAATCTTGTACATTAGATGTTCCTGAAGAATGCGGGAGTGTTAATTTAGCATCCAACTGTGAGCCTACAAATCTGTTACAAGGAAATGTTAATAGTTGTCGCCAATGTTCAGAAAAGGAACCGGTCCCTGATCTCCATTGTCAGATTTGTAGGATTTGGATTCACAGCCAGTGTTCGCCTTGGGTTGAATCACCATCTCGGCTTGCTGCAAGTTGGAGATGTGGTGATTGCCGGGAATGGCGATAG 4713 0.4239 MEPPVVRSRGRPRKRRREEDGTVAGDPKAFPEANKLPPVALVGRYVLKEFRRNTVLLGKVVRYERGLYRVVYESGGFEDLDSSLIRRILLLDSYFDDDLIRRKGELEELVLPKIAEERERGSSELQDDLMVENEEELDETDDESCGEARILSSDAETPIPSPPTLPPSSGTIGVPESCVLNLLSVYGFLRSFSIRLFLSPFTLDEFVGALNCKVSNTLLDAIHISLMRVLRRHLENISTDGSRRAIKCLRCIDWRLLDALTWPVFVFQYLAIYGYTKGPDWKGFYDEIFYGEYYLLPASRKLMILQILCDDALASEEFKAEMSMREESEVGIDYDNEDSLPTEIGPRRVHPRYSKTTACKDSETQKYVSELNAEDVDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPDGEWYCPECKINMIGPTIARGTSLKGAEVFGRDLYGQVFMGTCDHLLVLSVNRDEFCLKYYSQNDIPEVLQVLYASEKLRPIYNGICMAILEYWKIPENFVSICVTSVPQINLTNSNTEVKAEYSLTFANGICGDNLEPSLDGSLVTTCGPAPKYEDSFNKSAAVGPAKFSFVSSQFNNYGHANDIKLPMNLSLQAKGDQSAFGKCKGSFTNDFVYTGSSYKPQSYINCYMHGDFAASAAANLAVLSSEDSRSVGHVSDNLGKATSGNTYLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCLSCKALISSKKGCMLNHAALSATKNAMKILSGLAPVRIGEGIIPSIATYVIYIEESLRGLIVGPFLSECYRRHWRKQVERATSFSDIKPLLLKLEENIRTIAFCGDWVKLMDDWLAEFSTIQSAAVTLGTTQKRATCGRRKKQLSINKVTAGACPENFTWWHGAKFSKSVFQKAVLPKSMARKAARQGGFRKILGILYADGSEIPKRSRQVVWRAAVQMSRNASQLALQVRYLDFHVRWSDLIRPEHNLLDVKGQDTEASAFRNANIHEKRVVEDKILYRVAFGSQKHLPSRVMKHVEIEQGPEGKEKYWFSEKRIPLYLVKEYEMRNGKRLSDEEYLYITSQLHRRQLKATYKDIFFYLTCKRDKLNMLSCSVCQLGVLIGNALKCSACQGYCHTGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKVSCNESPTSPLLLEGQEQSTSAVLKGPGPKCDGQGLMSSRTKNSRSDMKRVASDFPSETKGRSRSCSWGIIWKKKNNEDTGFDFRLKNILLKGGSGLPQLEPVCRLCQKPYKSDLMYICCETCKHWYHAEAVELEESKLFDVLGFKCCKCRRIKSPLCPFSDLSYKTQEGKKSSRDSKKEYFGGDSDSGTPIDRRTYEPATPIYPAVDVSRQDNDPLLFSLSSVELITEPELDAKGVDNTVSGPGLGKSSKRERENNGSFRGNLHAEFSTSNEMVSKSVKDLSPVEHVSTDCSLLKDPEIVNYDELVDFEPHTYFSLTELLHSDENIQSEEANASRVFSGCLTKSCTLDVPEECGSVNLASNCEPTNLLQGNVNSCRQCSEKEPVPDLHCQICRIWIHSQCSPWVESPSRLAASWRCGDCREWR* 1571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1323 1570 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1567 - -
Pvu5g1323 1570 SMART testlast3 176 236 IPR018501 -
Pvu5g1323 1570 SMART PHD_3 1249 1297 IPR001965 -
Pvu5g1323 1570 SMART PHD_3 1521 1567 IPR001965 -
Pvu5g1323 1570 SMART PHD_3 382 425 IPR001965 -
Pvu5g1323 1570 SMART PHD_3 1089 1138 IPR001965 -
Pvu5g1323 1570 MobiDBLite consensus disorder prediction 1181 1206 - -
Pvu5g1323 1570 MobiDBLite consensus disorder prediction 1315 1343 - -
Pvu5g1323 1570 Pfam DDT domain 178 233 IPR018501 -
Pvu5g1323 1570 ProSiteProfiles Zinc finger PHD-type profile. 380 427 IPR019787 -
Pvu5g1323 1570 MobiDBLite consensus disorder prediction 1381 1413 - -
Pvu5g1323 1570 CDD PHD2_CHD_II 383 424 - -
Pvu5g1323 1570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1240 1309 IPR013083 -
Pvu5g1323 1570 CDD PHD_TCF19_like 1249 1296 - -
Pvu5g1323 1570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 373 429 IPR013083 -
Pvu5g1323 1570 SUPERFAMILY FYVE/PHD zinc finger 1245 1302 IPR011011 -
Pvu5g1323 1570 MobiDBLite consensus disorder prediction 121 146 - -
Pvu5g1323 1570 ProSitePatterns Zinc finger PHD-type signature. 383 424 IPR019786 -
Pvu5g1323 1570 MobiDBLite consensus disorder prediction 128 143 - -
Pvu5g1323 1570 MobiDBLite consensus disorder prediction 1189 1203 - -
Pvu5g1323 1570 ProSiteProfiles DDT domain profile. 176 236 IPR018501 -
Pvu5g1323 1570 Pfam PHD-finger 383 425 IPR019787 -
Pvu5g1323 1570 PANTHER PHD FINGER FAMILY PROTEIN 1 1567 - -
Pvu5g1323 1570 MobiDBLite consensus disorder prediction 1315 1329 - -
Pvu5g1323 1570 SUPERFAMILY FYVE/PHD zinc finger 375 431 IPR011011 -
Pvu5g1323 1570 MobiDBLite consensus disorder prediction 1 29 - -
Pvu5g1323 1570 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 286 322 IPR028942 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1323 Pvu-Chr5 35261758 35269366 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1323 38 1570 PHD Transcription Factor Family AT5G35210 42.749 0.0 1109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Pvu5g1323 DDT 4.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1323 - - var:108332913 2780.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1323 5 35261758 35269366 Pvu5g1323 5 35261758 35269366 ECH
Pvu5g1323 5 35261758 35269366 Pvu11g0917 11 8717232 8723770 PCT