Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1321 ATGGCCGAGAGAGATCATTCCAAAAACAAAAACCCAGTATTGGGTCCAGATGAAAGAGAGAAGAAGAGGGAGACTGGAACTAGCTTCGTCCCTCACCAGATCAGGGTGAATGTTGGGGAGGACGTGGTAGAAAAGGTTACAAAACTTGCTAAAACATGCTCTCAAACTGTTTGCGTACTTTCTGCTGTGGGTTCCATATCGAGCGCTGTCTTTAGCAAGCCCGGTCTTCCAAGTACTGATACTGTGAAGTGGGAGGGGCGCTTTGAAATTATGTCACTATCTGGAAAATATACCTTCATCCCTGGTGAGGATGATGCGCATAGAGTACATAACTGGTGGACCCTTTCACTATGTGGCAGTAATGGAGTTGTTTTTGGAGGTTCCGTTGTTGGGCCAATCATTGCGGCTTCCCATGTTGATGTATTTCTTGCCAGTTTCAAGCTAAAGAGTGTGGAAAAAATGAGAAGGCGCGCAGCTGAGGCTTTGGCTACTGCTTCTGCAGCAACAGCAGAAGATTCCAGTCTCAAGGAAACAGATGCAGAAACTGTTTGCGACAAATATCCAATGGTTGATGGCAAACAGTCTCGAGATTCTCCAACATCTGGAGTTTCTCCAGCAACTGGTATAGCATCAGAGAGTGTCACTCTTCAAACAACTGGTCAAGTATCAAACAGTGTCACTCCTATAACAGCTGATAAAACTTCAGAGAGTTTGACTCCTAAAACAGCTGATAAAACTTCAGAGAGTTTGACTCCTAAAACAACTGATAAAACTTCAGAGAGTTTCACTCCTAAAGCAGCTGATAAAACTTCAGAGAGTTTCACTCTTAAAACAGCTGATAAAACTTCAGAGAGTATCCCTTCTACCATGGGAGTGTACACAGCTGGGTCTTCTTCTGTTGCATATTATCCCATTCGTTGGAATATAGATTTAGAAAAGCTTCCCGATGAAGAAGATACTGAAGAAAGCGAAAACGAGAGTGACCGTTCACCATCATTTGGACTTTTAACAACTGATAAACCACTGTTGAAAGAAAGTTCCGAAACAACTGATAAACCACAGAAGGAACTCAGTTCTGAAACTGATGATAAACCACCTGAGAGTGTGACTCCTGCAGCATCTGATAAACCACCTGAGAATGTTGCTCCTGCAGCAACAACAAAATCACCAGAGAATGTCGCTGGTTCAACATCTGATACATCAATACCTGTGCTGGAATGCTATTTCAATCAAGCGTCAGACGATATTCCTGTGAATCTGCATCTATAG 1269 0.4295 MAERDHSKNKNPVLGPDEREKKRETGTSFVPHQIRVNVGEDVVEKVTKLAKTCSQTVCVLSAVGSISSAVFSKPGLPSTDTVKWEGRFEIMSLSGKYTFIPGEDDAHRVHNWWTLSLCGSNGVVFGGSVVGPIIAASHVDVFLASFKLKSVEKMRRRAAEALATASAATAEDSSLKETDAETVCDKYPMVDGKQSRDSPTSGVSPATGIASESVTLQTTGQVSNSVTPITADKTSESLTPKTADKTSESLTPKTTDKTSESFTPKAADKTSESFTLKTADKTSESIPSTMGVYTAGSSSVAYYPIRWNIDLEKLPDEEDTEESENESDRSPSFGLLTTDKPLLKESSETTDKPQKELSSETDDKPPESVTPAASDKPPENVAPAATTKSPENVAGSTSDTSIPVLECYFNQASDDIPVNLHL* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1321 422 MobiDBLite consensus disorder prediction 194 292 - -
Pvu5g1321 422 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 24 181 IPR039605 GO:0003680
Pvu5g1321 422 Coils Coil 151 171 - -
Pvu5g1321 422 MobiDBLite consensus disorder prediction 1 28 - -
Pvu5g1321 422 MobiDBLite consensus disorder prediction 313 399 - -
Pvu5g1321 422 CDD DUF296 31 121 IPR005175 -
Pvu5g1321 422 MobiDBLite consensus disorder prediction 344 363 - -
Pvu5g1321 422 Gene3D - 31 166 - -
Pvu5g1321 422 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 24 181 - -
Pvu5g1321 422 MobiDBLite consensus disorder prediction 385 399 - -
Pvu5g1321 422 MobiDBLite consensus disorder prediction 189 292 - -
Pvu5g1321 422 ProSiteProfiles PPC domain profile profile. 26 168 IPR005175 -
Pvu5g1321 422 Pfam Plants and Prokaryotes Conserved (PCC) domain 31 147 IPR005175 -
Pvu5g1321 422 SUPERFAMILY AF0104/ALDC/Ptd012-like 28 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1321 Pvu-Chr5 35244546 35247068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1321 26 162 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 39.437 5.82e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1321 - - pvu:PHAVU_005G127900g 782.711