Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu5g1318 | ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAGGTAGACCCAACTGAATTTGAGGCATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAGGAGAAACCAAATGAGCCTGTGGTTGTCTTCTTGAAGGTTGGTGAGCAGAAATTTGTCTTGGGAACCCTCTCCAGGGAGAAAATCCCTCAAATTTCTCTAGAATTGGTTCTGGAGAAAGAGTTTGAATTATCCCACAGTTCAAAGAATGCAACCGTTCATTTCTGTGGATACAAGGCTTATTACTCTGGAGATGATAGTGAGGAGGATGAATTTACTGATAGCGATGAGGATATTCCATTGGTTAACACAGAGAATGGAAAACCTGAAAAAAAATCTGAAGAAGTGAAGGCAGTTGGATCTAAAAAGCCAGATGCCAAAGCTGCTGCTCCATCAAAGAAAGTCAAGGTTGTTGAGCCAGAGAAAGACAAAGAGGACTCTGATGATGATTCTGATGAAGATGAAGCTTTTGGAATTTCTGATGAAGAGATGGATGATGCTGACAGTGATGACAGTGACGAGGAGTCTGGCAGTGATGAAGATGATGATGAAGAAACCCCTCCTCCTAAAAAGGCAGATTTAGGAAAGAAGAGACCAAATGAGTCTGCATCAAAAACTCCTGTTTCCTCCAAGAAAGCAAAAAATGCTACTCCAGAAAAGAATGATGGTAAGAAAACTGGAAATGTAGGAACTCCACACTCTGCGAAGAAAGGTGGAAAGACTCCCAACAGTGAAGCCAAGAGTCCCAAGTCCGGAGGACTTAGTTGCAAAAGCTGCAGCAAGTCTTTCAACTCCGATAGTGGTCTGCAACAACATAACAAGGCAAAGCACGGTGGCCAGTGA | 891 | 0.4343 | MEFWGAEVKVGESVKVDPTEFEACIHLSQAALGEAKKEKPNEPVVVFLKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHSSKNATVHFCGYKAYYSGDDSEEDEFTDSDEDIPLVNTENGKPEKKSEEVKAVGSKKPDAKAAAPSKKVKVVEPEKDKEDSDDDSDEDEAFGISDEEMDDADSDDSDEESGSDEDDDEETPPPKKADLGKKRPNESASKTPVSSKKAKNATPEKNDGKKTGNVGTPHSAKKGGKTPNSEAKSPKSGGLSCKSCSKSFNSDSGLQQHNKAKHGGQ* | 297 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu5g1318 | 296 | Pfam | Nucleoplasmin-like domain | 3 | 94 | IPR041232 | - | |
Pvu5g1318 | 296 | MobiDBLite | consensus disorder prediction | 260 | 290 | - | - | |
Pvu5g1318 | 296 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 270 | 296 | IPR013087 | - | |
Pvu5g1318 | 296 | Gene3D | Nucleoplasmin core domain | 1 | 100 | - | - | |
Pvu5g1318 | 296 | PANTHER | HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 | 1 | 292 | - | - | |
Pvu5g1318 | 296 | MobiDBLite | consensus disorder prediction | 200 | 216 | - | - | |
Pvu5g1318 | 296 | MobiDBLite | consensus disorder prediction | 117 | 159 | - | - | |
Pvu5g1318 | 296 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 272 | 293 | IPR013087 | - | |
Pvu5g1318 | 296 | MobiDBLite | consensus disorder prediction | 102 | 296 | - | - | |
Pvu5g1318 | 296 | MobiDBLite | consensus disorder prediction | 160 | 199 | - | - | |
Pvu5g1318 | 296 | PANTHER | 32 KDA HEAT SHOCK PROTEIN-RELATED | 1 | 292 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu5g1318 | Pvu-Chr5 | 35212603 | 35216025 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu5g1318 | 1 | 96 | C2H2 Transcription Factor Family | AT5G03740 | 50.000 | 3.71e-27 | 105 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pvu5g1318 | NPL | 1.4e-14 | CL0055 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu5g1318 | - | - | gmx:100795506 | 375.555 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu5g1318 | 5 | 35212603 | 35216025 | Pvu5g1318 | 5 | 35212603 | 35216025 | ECH | |
Pvu5g1318 | 5 | 35212603 | 35216025 | Pvu11g0924 | 11 | 8870475 | 8873217 | PCT |