Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1318 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAGGTAGACCCAACTGAATTTGAGGCATGCATACACCTTTCTCAGGCTGCTCTTGGTGAGGCAAAGAAGGAGAAACCAAATGAGCCTGTGGTTGTCTTCTTGAAGGTTGGTGAGCAGAAATTTGTCTTGGGAACCCTCTCCAGGGAGAAAATCCCTCAAATTTCTCTAGAATTGGTTCTGGAGAAAGAGTTTGAATTATCCCACAGTTCAAAGAATGCAACCGTTCATTTCTGTGGATACAAGGCTTATTACTCTGGAGATGATAGTGAGGAGGATGAATTTACTGATAGCGATGAGGATATTCCATTGGTTAACACAGAGAATGGAAAACCTGAAAAAAAATCTGAAGAAGTGAAGGCAGTTGGATCTAAAAAGCCAGATGCCAAAGCTGCTGCTCCATCAAAGAAAGTCAAGGTTGTTGAGCCAGAGAAAGACAAAGAGGACTCTGATGATGATTCTGATGAAGATGAAGCTTTTGGAATTTCTGATGAAGAGATGGATGATGCTGACAGTGATGACAGTGACGAGGAGTCTGGCAGTGATGAAGATGATGATGAAGAAACCCCTCCTCCTAAAAAGGCAGATTTAGGAAAGAAGAGACCAAATGAGTCTGCATCAAAAACTCCTGTTTCCTCCAAGAAAGCAAAAAATGCTACTCCAGAAAAGAATGATGGTAAGAAAACTGGAAATGTAGGAACTCCACACTCTGCGAAGAAAGGTGGAAAGACTCCCAACAGTGAAGCCAAGAGTCCCAAGTCCGGAGGACTTAGTTGCAAAAGCTGCAGCAAGTCTTTCAACTCCGATAGTGGTCTGCAACAACATAACAAGGCAAAGCACGGTGGCCAGTGA 891 0.4343 MEFWGAEVKVGESVKVDPTEFEACIHLSQAALGEAKKEKPNEPVVVFLKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHSSKNATVHFCGYKAYYSGDDSEEDEFTDSDEDIPLVNTENGKPEKKSEEVKAVGSKKPDAKAAAPSKKVKVVEPEKDKEDSDDDSDEDEAFGISDEEMDDADSDDSDEESGSDEDDDEETPPPKKADLGKKRPNESASKTPVSSKKAKNATPEKNDGKKTGNVGTPHSAKKGGKTPNSEAKSPKSGGLSCKSCSKSFNSDSGLQQHNKAKHGGQ* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1318 296 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Pvu5g1318 296 MobiDBLite consensus disorder prediction 260 290 - -
Pvu5g1318 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 296 IPR013087 -
Pvu5g1318 296 Gene3D Nucleoplasmin core domain 1 100 - -
Pvu5g1318 296 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 292 - -
Pvu5g1318 296 MobiDBLite consensus disorder prediction 200 216 - -
Pvu5g1318 296 MobiDBLite consensus disorder prediction 117 159 - -
Pvu5g1318 296 ProSitePatterns Zinc finger C2H2 type domain signature. 272 293 IPR013087 -
Pvu5g1318 296 MobiDBLite consensus disorder prediction 102 296 - -
Pvu5g1318 296 MobiDBLite consensus disorder prediction 160 199 - -
Pvu5g1318 296 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1318 Pvu-Chr5 35212603 35216025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1318 1 96 C2H2 Transcription Factor Family AT5G03740 50.000 3.71e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g1318 NPL 1.4e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1318 - - gmx:100795506 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1318 5 35212603 35216025 Pvu5g1318 5 35212603 35216025 ECH
Pvu5g1318 5 35212603 35216025 Pvu11g0924 11 8870475 8873217 PCT