Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1308 ATGAATTTTGAGATCGAATCCCCTTTTTCATTTCAATCTTCATCCACCATTTCCCAATCACCACCATGCACAACACTTAATAATACTAACCCTCACCCACTTTCACATCCTTTACTTCATGCACAATTTGTAGTATCACACAAAAGGAAAGATGGGAGAAAGAAGTTCAAGGAAACTCGCCACCCAATTTATAGGGGTGTCCGACAAAGGAAGGGAAAGTGGGTTTGTGAGCTCAGGGAACCCAAGAAGACCACAAGGATTTGGTTAGGGACATACCCTACACCTGAAATGGCAGCTAGGGCACATGATGTGGGTGCCCTAGCCATCAGGGGCAACTCAGCGATTCTAAACTTTCCAAACTCAGCTTCTCTTCTTCCCATCGTTACCTCCTCTTCACCTAAAGACATTCGAGCAGCTGCAGTAAAAGCTGCTGAGAGTTTCAGACCAATCATGCTTTCTTCCTTCTCCACTTCTCATCACAAGAAAACTAGTCGCAAAGCTAATGGCAAGGAGAAAAACAATTTTGATTTGTCTTCAACCATGTTCTTCGATGAGGAGGCATTGTTTAACATGCCGGGACTGTTGGATAGAATGGCAGAGAGTTTATGTCTTTTTCCACTACCTTCAATAGTTGATTGGGATGATCATGCTTATTTCACAGAGTTCAATTTATGGACTGATTGA 684 0.4269 MNFEIESPFSFQSSSTISQSPPCTTLNNTNPHPLSHPLLHAQFVVSHKRKDGRKKFKETRHPIYRGVRQRKGKWVCELREPKKTTRIWLGTYPTPEMAARAHDVGALAIRGNSAILNFPNSASLLPIVTSSSPKDIRAAAVKAAESFRPIMLSSFSTSHHKKTSRKANGKEKNNFDLSSTMFFDEEALFNMPGLLDRMAESLCLFPLPSIVDWDDHAYFTEFNLWTD* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1308 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 2 226 IPR045277 GO:0003700
Pvu5g1308 227 ProSiteProfiles AP2/ERF domain profile. 63 119 IPR001471 GO:0003700|GO:0006355
Pvu5g1308 227 CDD AP2 62 121 IPR001471 GO:0003700|GO:0006355
Pvu5g1308 227 MobiDBLite consensus disorder prediction 1 32 - -
Pvu5g1308 227 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Pvu5g1308 227 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Pvu5g1308 227 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 2 226 - -
Pvu5g1308 227 SMART rav1_2 63 125 IPR001471 GO:0003700|GO:0006355
Pvu5g1308 227 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Pvu5g1308 227 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
Pvu5g1308 227 Gene3D AP2/ERF domain 63 120 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1308 Pvu-Chr5 35099239 35100039 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1308 48 210 AP2-EREBP Transcription Factor Family AT4G25470 52.695 3.12e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu5g1308 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1308 - - var:108332912 337.035