Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1305 ATGGATGTAACCATGAACAGAGTGGAGACCGAATGTTCTTATTACTACTCTCTCTCTTCATCACCATCACCCACTTCTTCTCAAAGCCAACTCTGCAACCCCAATTCTCCATCGGACAATTCACCATTTCAAGCAGAAGCAACAAAACCAGCGTTGAGTTCTCACAAGAGGAAAACTGGGAGAAAAAAGTTTCGTGAGACACGACATCCAGTGTATAGAGGGGTTCGTCAGAGAAACGGTGACAGATGGGTGTGCGAAGTTCGTGAACCCAACAAGAAATCAAGGATATGGCTTGGGACATACTCCACGCCAGAAATGGCAGCTAGGGCACACGACGTGGCTGTCCTAGCACTTAAGGGCACCTCTGCGGTGTTGAACTTCCCTGATTCTCATTCCGTTTCTCTTCTTCCAGTTGCAAAGTCATCTTCAGCTGCAGACATCAGACTGGCTGCAGCAAAACTTTCCGAGGTTTTTCCACCTTCTTCATCCTCTACAAATGATTCAAGGGTTAAAATTGAAACTAACCCTTGTTCACTGGAGGCTGTTGCTGATTTTGCCAACACTTTGAACAATGATGACGGGTTCAACAAATCAATGTTTTTTGACGAAGAGGCCATTTATAACATGCCAGGTTTGTTAGATAGTATGGCAGAAGGTCTTCTTATTACTCCACCTTCTATGAGGAGATTTGATTGGGACGAGGTTGATTGTGAAACAGATCTCACTCTCTGGACTTATTAA 741 0.444 MDVTMNRVETECSYYYSLSSSPSPTSSQSQLCNPNSPSDNSPFQAEATKPALSSHKRKTGRKKFRETRHPVYRGVRQRNGDRWVCEVREPNKKSRIWLGTYSTPEMAARAHDVAVLALKGTSAVLNFPDSHSVSLLPVAKSSSAADIRLAAAKLSEVFPPSSSSTNDSRVKIETNPCSLEAVADFANTLNNDDGFNKSMFFDEEAIYNMPGLLDSMAEGLLITPPSMRRFDWDEVDCETDLTLWTY* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1305 246 Pfam AP2 domain 70 120 IPR001471 GO:0003700|GO:0006355
Pvu5g1305 246 MobiDBLite consensus disorder prediction 19 48 - -
Pvu5g1305 246 Gene3D AP2/ERF domain 71 129 IPR036955 GO:0003700|GO:0006355
Pvu5g1305 246 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 245 IPR045277 GO:0003700
Pvu5g1305 246 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Pvu5g1305 246 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Pvu5g1305 246 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Pvu5g1305 246 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Pvu5g1305 246 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Pvu5g1305 246 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Pvu5g1305 246 MobiDBLite consensus disorder prediction 19 68 - -
Pvu5g1305 246 MobiDBLite consensus disorder prediction 54 68 - -
Pvu5g1305 246 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1305 Pvu-Chr5 35040940 35041680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1305 49 246 AP2-EREBP Transcription Factor Family AT4G25470 46.231 2.76e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu5g1305 AP2 9.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1305 - - gmx:100816109 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1305 5 35040940 35041680 Pvu5g1305 5 35040940 35041680 ECH
Pvu5g1305 5 35040940 35041680 Pvu11g0939 11 9148323 9148991 PCT