LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu5g1303	ATGGAGGAACACGAGAATGGTGCCAACGCAAGCGAAGAAGAAGCGTTGATAGGCCCGGGCCCGGCCCCTCGGGCTCGGCGCAAGCGACCCCTTCAGTTCGAGCAAGCCTACCTCAATGCTTTACCCTCCGCCAACATGTACGAGAAAAGTTATATGCACCGTGACGTGGTTACGCATGTCGCTGTTTCAGCTGCGGATTTTTTCATCACTGGAAGTTCCGATGGGCATTTGAAGTTTTGGAAGAAAAAGCCTATTGGCATTGAGTTTGCCAAACACTTCAGATCTCATCTTGGTCCAATTGAAGGTCTAGCTGTTAGTATTGATGGTCTGCTTTGCTGCACAATATCAGATGACCGCTCTGTAAAAATATACGATGTAGTCAACTATGACATGATGGTCATGATTCGCTTGCCATATACTCCTGGTGCTGTTGATTGGGTTTACAAGCAAGGGGATGTTAAAGCTACGCTTGCTATTAGTGATAGGAACTCATCTTTTGTGCACATATATGATGCACGAGCTGGTTCAAATGATCCCATCATCTCCAAAGAGATACATATGGGTCCTATCAAAGTTATGAAGTACAATCCTGTATATGATTCTGTACTTTCGGCAGATGCAAAGGGGATAATTGAATACTGGAGTTCTGCAACACTTCAATTCCCAGAGAATGAGGTCAATTTTAAACTGAAAAGTAATACTGACCTCTTTGAAATTGCAAAATGCAAGACTTCTGTTTCAACTATTGAGGTAAGTCCAGATGGTAAACAGTTTTCCATTACATCACCTGATCGAAGGATACGTGTGTTTTGGTTCAGAACGGGTAAATTAAGGCGAGTTTATGATGAATCCCTGGAGGTTGCTCAAGACCTCCAAAGAAGTGATGCTCCATTATATCGGTTGGAAGCTATTGATTTTGGTCGAAGAATGGCTGTTGAGAAAGAAATAGAAAAGACAGAAAGTGCACCACTTCCAAATGCAGTCTTCGATGAAAGTTCCAATTTTCTTATATATGCAACCTTGCTTGGGATAAAAATTGTTAATCTGCACACCAATAAAGTTAGTCGAATACTTGGAAAGGTGGAGAATAATGATAGATTCTTAAGAATAGCTTTATATCAAGGTGATCGGAGTAGCAAAAGAGTAAGAAGGATCCCTTCGGCAGCTGCAAATGTCAATGAGAGCAAGGAGCCTTTGACAGATCCCACTCTTCTGTGTTGTGCCTTCAAAAAGCACAGAATATATTTATTCAGTCGTAGAGAGCCAGAGGAGCCTGAAGATGCAACTAAAGGAAGAGATGTGTTCAATGAAAAACCTCCTGCTGATGAACTTTTGGCAGTTTCAGATATTGGAAAGTCAGTTACAACGTCACTTCCTGAAAATGTGATTCTACACACCACAATGGGTGATATTCACATGAAATTATACCCAGAGGAATGTCCAAAAACTGTGGAGAATTTCACAACACACTGTCGAAATGGCTATTATGACAATCTTATTTTTCATAGGGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTGGGAGATGGCACTGGTGGGCAATCTATTTGGGGGAGAGAATTTGAGGATGAATTTCATAAAAGCTTGAGGCATGATAGGCCGTTCACAGTATCAATGGCGAACGCAGGCCCAAATACAAATGGCTCTCAGTTCTTTATCACCACAGTGGCTACTCCATGGTTGGACAACAAACACACTGTATTTGGTAGAGTTGCAAAGGGAATGGATGTTGTTCAGGGCATTGAAAAAGTGAAGACAGACAAGACAGACAAGCCATATCAAGATGTTAAAATTCTAAATGTCACTGTACCAAAGTCTTGA	1848	0.4161	MEEHENGANASEEEALIGPGPAPRARRKRPLQFEQAYLNALPSANMYEKSYMHRDVVTHVAVSAADFFITGSSDGHLKFWKKKPIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISDDRSVKIYDVVNYDMMVMIRLPYTPGAVDWVYKQGDVKATLAISDRNSSFVHIYDARAGSNDPIISKEIHMGPIKVMKYNPVYDSVLSADAKGIIEYWSSATLQFPENEVNFKLKSNTDLFEIAKCKTSVSTIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPLPNAVFDESSNFLIYATLLGIKIVNLHTNKVSRILGKVENNDRFLRIALYQGDRSSKRVRRIPSAAANVNESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLAVSDIGKSVTTSLPENVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQGIEKVKTDKTDKPYQDVKILNVTVPKS*	616

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu5g1303	615	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED	4	613	IPR044666	-
Pvu5g1303	615	MobiDBLite	consensus disorder prediction	1	25	-	-
Pvu5g1303	615	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	475	490	IPR002130	GO:0000413\|GO:0003755
Pvu5g1303	615	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	501	513	IPR002130	GO:0000413\|GO:0003755
Pvu5g1303	615	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	544	559	IPR002130	GO:0000413\|GO:0003755
Pvu5g1303	615	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	559	571	IPR002130	GO:0000413\|GO:0003755
Pvu5g1303	615	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	572	587	IPR002130	GO:0000413\|GO:0003755
Pvu5g1303	615	PANTHER	PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1	4	613	-	-
Pvu5g1303	615	SMART	WD40_4	44	81	IPR001680	GO:0005515
Pvu5g1303	615	SMART	WD40_4	232	271	IPR001680	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu5g1303	Pvu-Chr5	35008600	35015152	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu5g1303	462	612	U-box Gene Family	AT5G67530	46.358	7.75e-41	155

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu5g1303	K12736		-	gmx:100792207	1184.86

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu5g1303	5	35008600	35015152	Pvu5g1303	5	35008600	35015152	ECH

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