Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1302 ATGAAGGTGGTGGCTGCTTATTTGCTTGCAGTGTTGGGAGGGAACCCATCTCCTTCTGCCACTGATATCAAACACATTCTTAGCGCAGTTGGAGCTGATGCTGAGGAGGAGTTGATTGCGTTGCTCTTAGAGGAAGTGAAGGGCAAAGACTTCAACGAACTACTAGCCAGCGGAAGGGAAAAGATTTCTGCTGTGTCTGGCGGTGGTGGTGCTGCAGTGGCTGTTGCTGCTGCACCAGCTGGTGGTGCTGCTGCACCTGCTGCGGAAGCAAAGGAAGAAAAGAAAGTTGAAGAGAAGGAGGAGTCCGATGATGATATGGGTTTCAGTTTGTTCGACTAA 339 0.5044 MKVVAAYLLAVLGGNPSPSATDIKHILSAVGADAEEELIALLLEEVKGKDFNELLASGREKISAVSGGGGAAVAVAAAPAGGAAAPAAEAKEEKKVEEKEESDDDMGFSLFD* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1302 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pvu5g1302 112 Pfam 60s Acidic ribosomal protein 17 111 - -
Pvu5g1302 112 CDD Ribosomal_P2 1 112 IPR044076 GO:0002182|GO:0003735|GO:0022625
Pvu5g1302 112 Gene3D - 1 59 IPR038716 -
Pvu5g1302 112 PRINTS Ribosomal protein P2 signature 21 32 IPR001859 GO:0003735|GO:0005840|GO:0006412
Pvu5g1302 112 PRINTS Ribosomal protein P2 signature 76 90 IPR001859 GO:0003735|GO:0005840|GO:0006412
Pvu5g1302 112 MobiDBLite consensus disorder prediction 88 102 - -
Pvu5g1302 112 MobiDBLite consensus disorder prediction 82 112 - -
Pvu5g1302 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2-1 1 112 - -
Pvu5g1302 112 Hamap 50S ribosomal protein L12 [rpl12]. 2 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1302 Pvu-Chr5 35004793 35006526 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1302 1 112 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 62.500 1.57e-28 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1302 K02943 - gmx:100791682 117.472