Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1292 ATGGCGGAAGAACACCGATGCCAGGCCCCACGCTTGTGCGTCAACAATTGCGGTTTCTTTGGCAGCCCTGCCACGCAGAATCTGTGCTCGAAGTGTTACCGCGATTTGCAGCTCAAGGAGCAGCAATCTTCCAACGCGAAGATGGTTCTGAATCAGTCTCTCGTTCTTCCGGCGCCTCCGGCGCTGGTTTCTCAGCCGTCCTCTTCGAAGACGGCGGATCTGGATTCCGCGGTGGTTGAGGAAGCGCCACGCGCGGCAGACGAGGCGAAGGCGCCGCAGCAGAACCGGTGTATGACGTGCAGGCGGCGCGTGGGGTTGACTGGGTTCAAGTGCCGGTGCGGGATGATGCTGTGCGGGACGCACCGTTACCCGGAGCAGCACGCGTGCGAGTTCGACTTCAAGGGGATGGGGAGGGACCAGATCGCGAAGGCGAATCCGGTGGTGAAGGGCGAGAAGCTCGAGAAGATCTGA 471 0.6136 MAEEHRCQAPRLCVNNCGFFGSPATQNLCSKCYRDLQLKEQQSSNAKMVLNQSLVLPAPPALVSQPSSSKTADLDSAVVEEAPRAADEAKAPQQNRCMTCRRRVGLTGFKCRCGMMLCGTHRYPEQHACEFDFKGMGRDQIAKANPVVKGEKLEKI* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1292 156 ProSiteProfiles Zinc finger A20-type profile. 7 41 IPR002653 GO:0003677|GO:0008270
Pvu5g1292 156 SUPERFAMILY AN1-like Zinc finger 83 151 IPR035896 -
Pvu5g1292 156 ProSiteProfiles Zinc finger AN1-type profile. 91 137 IPR000058 GO:0008270
Pvu5g1292 156 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 156 - -
Pvu5g1292 156 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 156 - -
Pvu5g1292 156 Gene3D - 67 152 IPR035896 -
Pvu5g1292 156 Pfam A20-like zinc finger 11 34 IPR002653 GO:0003677|GO:0008270
Pvu5g1292 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 58 - -
Pvu5g1292 156 Pfam AN1-like Zinc finger 97 133 IPR000058 GO:0008270
Pvu5g1292 156 SMART A20_3 10 34 IPR002653 GO:0003677|GO:0008270
Pvu5g1292 156 Gene3D - 1 54 - -
Pvu5g1292 156 SMART AN1_Zf_4 97 134 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1292 Pvu-Chr5 34900198 34901543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1292 1 156 C2H2 Transcription Factor Family AT3G52800 49.419 5.34e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1292 - - gmx:106795660 288.115