Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu5g1290 | ATGAGTTTTAGAGAGTGCAATGTAGAAAACAAGAATCTGTGTCTTCAGACCCCGACTTTTATTGAGTGGCTCGAACCATCTTCTTCTCTAACAGGTTCAATATCACCACCACCTTCTTCCTTGTCTCATCAGCATGATCAACTTTCCCAAGAAACGATCCAGTTTTTGCCCTTCAAGGAAGACCATGGAGTGAAAAGGGATGGTTTAGAAGTGAAAGAAGAGAAGGTGGAACAGGTGACTGTGGCTTTGCACATTGGATTGCCTCACACAGGAGACCCTGACCCTGATGAACATGATGGCAGTGATGAGAAGAAGGTTTTCCATGTAAAGGAAGAAGAGCCCTTGAAGAAAAGCTTCCAGGGTTGTTCTTTTAACCAGGAGAGAAGATTTTGGATACCAACTCCTGCACAGATCCTTGTAGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCATGGATCCGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCTAAGCCATTGAAGGACTTCAGAACTCTCCAAACCCACTACAAAAGAAAGCATGGTGCAAAACCATTTATGTGCCGAAAGTGCTCAAAATCCTTTGCAGTTAAAGGGGATTGGAGGACTCACGAAAAGAACTGCGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGGTCCCTCAAAGATCATATCAGATCCTTTGGAAAAGGCCACTCCCCACATCCTTCTCATGAAGGCTTCGTTGAGGATGAGAAGGAATGCGTTACTGGATCTGATGAAGATGAAGTTGCTCATACGTGA | 927 | 0.4401 | MSFRECNVENKNLCLQTPTFIEWLEPSSSLTGSISPPPSSLSHQHDQLSQETIQFLPFKEDHGVKRDGLEVKEEKVEQVTVALHIGLPHTGDPDPDEHDGSDEKKVFHVKEEEPLKKSFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSHEGFVEDEKECVTGSDEDEVAHT* | 309 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu5g1290 | 308 | PANTHER | ZINC FINGER PROTEIN WIP3-LIKE | 43 | 307 | - | - | |
Pvu5g1290 | 308 | PANTHER | ZINC FINGER PROTEIN WIP2 | 43 | 307 | IPR043584 | GO:0003700|GO:0010468 | |
Pvu5g1290 | 308 | SUPERFAMILY | beta-beta-alpha zinc fingers | 215 | 249 | IPR036236 | - | |
Pvu5g1290 | 308 | MobiDBLite | consensus disorder prediction | 277 | 308 | - | - | |
Pvu5g1290 | 308 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 147 | 167 | IPR013087 | - | |
Pvu5g1290 | 308 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 145 | 172 | IPR013087 | - | |
Pvu5g1290 | 308 | Pfam | Zinc finger, C2H2 type | 145 | 164 | IPR013087 | - | |
Pvu5g1290 | 308 | SUPERFAMILY | beta-beta-alpha zinc fingers | 114 | 168 | IPR036236 | - | |
Pvu5g1290 | 308 | SMART | c2h2final6 | 192 | 224 | IPR013087 | - | |
Pvu5g1290 | 308 | SMART | c2h2final6 | 229 | 249 | IPR013087 | - | |
Pvu5g1290 | 308 | SMART | c2h2final6 | 145 | 167 | IPR013087 | - | |
Pvu5g1290 | 308 | Gene3D | Classic Zinc Finger | 144 | 167 | - | - | |
Pvu5g1290 | 308 | Gene3D | Classic Zinc Finger | 227 | 276 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu5g1290 | Pvu-Chr5 | 34880007 | 34883717 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu5g1290 | 7 | 298 | C2H2 Transcription Factor Family | AT1G08290 | 57.310 | 2.38e-119 | 345 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pvu5g1290 | zf-C2H2_6 | 0.00013 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu5g1290 | - | - | gmx:100819306 | 562.762 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu5g1290 | 5 | 34880007 | 34883717 | Pvu5g1290 | 5 | 34880007 | 34883717 | ECH | |
Pvu5g1290 | 5 | 34880007 | 34883717 | Pvu11g0958 | 11 | 9460420 | 9463816 | PCT |