Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1290 ATGAGTTTTAGAGAGTGCAATGTAGAAAACAAGAATCTGTGTCTTCAGACCCCGACTTTTATTGAGTGGCTCGAACCATCTTCTTCTCTAACAGGTTCAATATCACCACCACCTTCTTCCTTGTCTCATCAGCATGATCAACTTTCCCAAGAAACGATCCAGTTTTTGCCCTTCAAGGAAGACCATGGAGTGAAAAGGGATGGTTTAGAAGTGAAAGAAGAGAAGGTGGAACAGGTGACTGTGGCTTTGCACATTGGATTGCCTCACACAGGAGACCCTGACCCTGATGAACATGATGGCAGTGATGAGAAGAAGGTTTTCCATGTAAAGGAAGAAGAGCCCTTGAAGAAAAGCTTCCAGGGTTGTTCTTTTAACCAGGAGAGAAGATTTTGGATACCAACTCCTGCACAGATCCTTGTAGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCATGGATCCGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCAAGAGCTAAGCCATTGAAGGACTTCAGAACTCTCCAAACCCACTACAAAAGAAAGCATGGTGCAAAACCATTTATGTGCCGAAAGTGCTCAAAATCCTTTGCAGTTAAAGGGGATTGGAGGACTCACGAAAAGAACTGCGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGGTCCCTCAAAGATCATATCAGATCCTTTGGAAAAGGCCACTCCCCACATCCTTCTCATGAAGGCTTCGTTGAGGATGAGAAGGAATGCGTTACTGGATCTGATGAAGATGAAGTTGCTCATACGTGA 927 0.4401 MSFRECNVENKNLCLQTPTFIEWLEPSSSLTGSISPPPSSLSHQHDQLSQETIQFLPFKEDHGVKRDGLEVKEEKVEQVTVALHIGLPHTGDPDPDEHDGSDEKKVFHVKEEEPLKKSFQGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSHEGFVEDEKECVTGSDEDEVAHT* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1290 308 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 43 307 - -
Pvu5g1290 308 PANTHER ZINC FINGER PROTEIN WIP2 43 307 IPR043584 GO:0003700|GO:0010468
Pvu5g1290 308 SUPERFAMILY beta-beta-alpha zinc fingers 215 249 IPR036236 -
Pvu5g1290 308 MobiDBLite consensus disorder prediction 277 308 - -
Pvu5g1290 308 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Pvu5g1290 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 172 IPR013087 -
Pvu5g1290 308 Pfam Zinc finger, C2H2 type 145 164 IPR013087 -
Pvu5g1290 308 SUPERFAMILY beta-beta-alpha zinc fingers 114 168 IPR036236 -
Pvu5g1290 308 SMART c2h2final6 192 224 IPR013087 -
Pvu5g1290 308 SMART c2h2final6 229 249 IPR013087 -
Pvu5g1290 308 SMART c2h2final6 145 167 IPR013087 -
Pvu5g1290 308 Gene3D Classic Zinc Finger 144 167 - -
Pvu5g1290 308 Gene3D Classic Zinc Finger 227 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1290 Pvu-Chr5 34880007 34883717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1290 7 298 C2H2 Transcription Factor Family AT1G08290 57.310 2.38e-119 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu5g1290 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1290 - - gmx:100819306 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1290 5 34880007 34883717 Pvu5g1290 5 34880007 34883717 ECH
Pvu5g1290 5 34880007 34883717 Pvu11g0958 11 9460420 9463816 PCT