Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1283 ATGGCGAGCCACAGAATAGGAGAACTTGGTTTGTCTGAGTCGGGACCTTCAAGTCACCACATCCCTTATGGAGTGCTTAATGGAATTAACACTCCAGTATCAAGCTTAATCAATCAAGGATCTGCTTTTGATTTTGGGGAGCTGGAGGAAGCAATTGTTCTGCATGGAGTTAAGGGTAGAAATGATGATAGCAAAGCATCTTTATTCACAGCCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAACAAACCCCAAGAGGTGGTTCAAAGTCAGGAGGGGAAAGCACTGATTCAGGTCTTTCCAGCAAAACTGAGCCCCCCTTTGAGGCAGAATCTCCCATGAGTAAAAAGGCATCTTCTTCAGATCACCAGGCTTTTGATCAGCAGCATCTGCAGCACAGACAGCAACTTCAACAGGATATGGCAAGCGATGCCGCAAGAACAGCCTCTTCACAGAATCAATCAGCAGCCAAATCACAAGAAAAGAGAAAGGGAGCTGGTTCAACATCAGAGAAACCACTTGATGCAAAGACTCTAAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAACTAGAATCAAGTAGATTAAAGCTTACCCAGATAGAACAAGAACTCCAAAGAGCACGCTCTCAGGGCTTGTTCGTGGATTGTGGTGGTGTTGGAGGCAATGTAAGCTCTGCAGGAGCCGCAATGTTTGACATGGAATATGGACGATGGTTAGAAGAAGACCACAGGCTAATGGGAGAGCTCCGGAACGGGTTGCAAGTACCCTTATCAGATAGTGATATGAGAGTGATGGTGGATGGATATCTCTCCCACTATGATGAGATTTTCAGGGTCAAGGGTGTGGCTGCTAAATCAGATGTGTTTCACCTTATCAATGGCATGTGGACTTCCCAAGCTGAACGTTGCTTTCTCTGGATTGGTGGTTTTAGACCCTCTGATCTCATCACGATGCTGATTCAACAATTGGAGCCACTAGCTGAGCAACAGATAATGGGGATGTATGGCTTGAGACACTCATCACAGCAAGCAGAAGAAGCACTCTCTCAGGGCCTTGAACAGTTGCAGCAATCTCTGGTGGACACCATTGCTGGAGGCCCAGTTGTTGATGGTGTGCAACAAATGGTCGTTGCCATGAGCAAACTAGCCAATCTTGAAGGATTTGTTCGTCAGGCTGATAATTTGAGGCAACAAACACTTCATCAGTTATGTCGATTACTCACAGTTCGTCAAGCTGCAAGATGTTTCATTGTCATTGGAGAATACTATGGACGTCTTCGAGCCCTTAGTTCTCTCTGGGCATCTAGACCAAGAGAGAGTTTGATCGGTGATGATAACTCATGTCAAACAACAACCGAAATGCAAGTGGTCCAACATTCTCAGAACCATTTCTCAAGTTTCTGA 1461 0.4572 MASHRIGELGLSESGPSSHHIPYGVLNGINTPVSSLINQGSAFDFGELEEAIVLHGVKGRNDDSKASLFTARPAATLEMFPSWPMRFQQTPRGGSKSGGESTDSGLSSKTEPPFEAESPMSKKASSSDHQAFDQQHLQHRQQLQQDMASDAARTASSQNQSAAKSQEKRKGAGSTSEKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQIEQELQRARSQGLFVDCGGVGGNVSSAGAAMFDMEYGRWLEEDHRLMGELRNGLQVPLSDSDMRVMVDGYLSHYDEIFRVKGVAAKSDVFHLINGMWTSQAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLEQLQQSLVDTIAGGPVVDGVQQMVVAMSKLANLEGFVRQADNLRQQTLHQLCRLLTVRQAARCFIVIGEYYGRLRALSSLWASRPRESLIGDDNSCQTTTEMQVVQHSQNHFSSF* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1283 486 PANTHER TRANSCRIPTION FACTOR TGA9 64 465 - -
Pvu5g1283 486 MobiDBLite consensus disorder prediction 170 185 - -
Pvu5g1283 486 Gene3D - 182 231 - -
Pvu5g1283 486 CDD bZIP_HBP1b-like 183 233 - -
Pvu5g1283 486 PANTHER TRANSCRIPTION FACTOR TGA9 64 465 - -
Pvu5g1283 486 MobiDBLite consensus disorder prediction 80 185 - -
Pvu5g1283 486 Coils Coil 202 229 - -
Pvu5g1283 486 Pfam bZIP transcription factor 182 218 IPR004827 GO:0003700|GO:0006355
Pvu5g1283 486 SMART brlzneu 179 244 IPR004827 GO:0003700|GO:0006355
Pvu5g1283 486 MobiDBLite consensus disorder prediction 120 169 - -
Pvu5g1283 486 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700|GO:0006355
Pvu5g1283 486 SUPERFAMILY Leucine zipper domain 183 226 IPR046347 GO:0003700|GO:0006355
Pvu5g1283 486 Pfam Seed dormancy control 265 339 IPR025422 GO:0006351|GO:0043565
Pvu5g1283 486 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700|GO:0006355
Pvu5g1283 486 MobiDBLite consensus disorder prediction 88 111 - -
Pvu5g1283 486 ProSiteProfiles DOG1 domain profile. 247 455 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1283 Pvu-Chr5 34782352 34789375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1283 165 486 bZIP Transcription Factor Family AT1G08320 73.375 1.47e-178 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu5g1283 DOG1 8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1283 K14431 - gmx:100775461 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1283 5 34782352 34789375 Pvu5g1283 5 34782352 34789375 ECH
Pvu5g1283 5 34782352 34789375 Pvu11g0964 11 9554014 9557206 PCT