Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1281 ATGTACCATCATCACCGACACCAAGGAAAAAACATTCATTCTACTTCCAGAATGCCAATCCCCTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGGTCTGGAGATTCTGGACTTGTGCTTTCAACTGATGCAAAGCCAAGATTAAAATGGACACCAGATCTTCATGCCAGATTCATAGAAGCAGTAAATCAGTTAGGGGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTTCAGGGCTTACCTTATATCATTTAAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACAACGTGACACACAAAATGACAACAAGTGCAACCACTGGGGAGAGACTTTCTGAAACCAGTGGAACTCACATGAGCAAATTAAGCCTTGGACCGCAGGCTAACAATCATGCTAATTTTCAATGCCTTCTATCCAAAGATTTGCATATAGGCGAGGCACTGCAAATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGGTACAAAAACACCTGCAGCTTAGGATAGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAGGATACTCTTGGCAGACAGAATTTGGGAATAATAGGACTTGAAACTGCCAAAGTTCAACTATCAGAGCTGGTGTCCAAAGTCTCATCTCAGTGCCTTAACTCAGCATTCTCAGAGCTGAAGGAATTGCAAGGATTTTGCCCTCAGCAAACACATACCAACCAGCCAAACGATTGCTCAATGGACAGTTGCCTCACATCCTGTGACATATTACAAAAGGAGCAAAAGATTCAAAATAGCCTAAGACAATTCAACAGCCATGTGTTCATGGAACAAAAGGAAAGCACAGATGCTCGCAACAATCTTAGGAACTCTGAACTGAAGTGGTGTGATGATGGAAAAAAGAACACCTTCCTTGCCCCATTGAGCAAAACTGAAGAAAGAAGAAAGTATGCCGCTGAAACCGGTCCTGGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAATAGAAGCAGCATGTATCCTGAAAGCCTGATCAAAGAAAGCCAGTCAGAAGGAGAGTTCCAACACCGAAACAGAATCAAGACAGAAACAATGAAAGCAGTGGATGAAAAAGTTTGTCAAGATTATAGAATGCCAGCTTCTTACTTTGTAGCAACAAGATTGGACCTAAACAACCATGGAGACAATGAAGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTAA 1293 0.4223 MYHHHRHQGKNIHSTSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGISGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKMTTSATTGERLSETSGTHMSKLSLGPQANNHANFQCLLSKDLHIGEALQMQIEVQRRLNEQLEVQKHLQLRIEAQGKYLQSVLEKAQDTLGRQNLGIIGLETAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQTHTNQPNDCSMDSCLTSCDILQKEQKIQNSLRQFNSHVFMEQKESTDARNNLRNSELKWCDDGKKNTFLAPLSKTEERRKYAAETGPGNLSMSIGLERETENRSSMYPESLIKESQSEGEFQHRNRIKTETMKAVDEKVCQDYRMPASYFVATRLDLNNHGDNEAATTCKQLDLNRFSWS* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1281 430 Gene3D - 45 103 - -
Pvu5g1281 430 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Pvu5g1281 430 MobiDBLite consensus disorder prediction 115 138 - -
Pvu5g1281 430 PANTHER MYB-RELATED PROTEIN 2 5 430 - -
Pvu5g1281 430 MobiDBLite consensus disorder prediction 1 21 - -
Pvu5g1281 430 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Pvu5g1281 430 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 430 IPR044848 GO:0003700
Pvu5g1281 430 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Pvu5g1281 430 Pfam MYB-CC type transfactor, LHEQLE motif 157 202 IPR025756 -
Pvu5g1281 430 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1281 Pvu-Chr5 34763098 34766035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1281 78 430 G2-like Transcription Factor Family AT3G04030 47.339 1.17e-91 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu5g1281 Myb_DNA-binding 3.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1281 - - pvu:PHAVU_005G123900g 868.226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1281 5 34763098 34766035 Pvu11g0970 11 9635541 9638552 PCT