Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1267 ATGGCTGATCTCCCACCTGGTTTTCGATTCTACCCGACAGAGGAAGAGCTTGTTGCTTTCTATCTGCACAACCAGCTCCAGGGACAAACACACGACACAAGCAGGGTTATTCCAGTCATTGACATCAATGGCGTAGAGCCTTGGAACCTTCCAACCCTTGCAGGGGAGCGTTGTCGTGGAGACACGGAGCAATGGTTCTTCTTTTCCCCGAGGCAAGAGAGAGAGACGAGAGGAGGTAGACCCAGCAGAACCACCGCAAGTGGGTACTGGAAAGCCACTGGTTCTCCCTGCCACGTTTACTCTTCCGACAACAAAGTCATTGGGATGAAGAAAACCATGGTGTTTTACAAAGGGAAGGCTCCAACTGGAAGGAAAACCAAATGGAAGATGCATGAGTACAAAGCCATTCAACACTCTCATCAATCCAACACAACCTCTCCCGAGTTGAGGCACGAGTTCAGCTTGTGTCGTGTTTATGTTATATCGGGAAACTTTAGATCGTTTGATCGACGACCTCTTGAGATGGCAAGAGCTGAGTTAGGAGCTGATGAGAATAGAGGTGCTGCTTCAACAAGTGGTCAACCGAGAGCAGCGGTGGTGGATGGATCAAGTTCTTCTGATACTTCCCACTCTGGTGATGCTCATAATCATGAAGCTGGAGCAGGGTCAAGTGGCATACATTTGAATGCAAGCAATAGGGTTGAGGAACCATTTTGGGAATGGGAAGAGTTAATTGGACATGACCCTTATCTCAAGCATGCTTAA 765 0.4824 MADLPPGFRFYPTEEELVAFYLHNQLQGQTHDTSRVIPVIDINGVEPWNLPTLAGERCRGDTEQWFFFSPRQERETRGGRPSRTTASGYWKATGSPCHVYSSDNKVIGMKKTMVFYKGKAPTGRKTKWKMHEYKAIQHSHQSNTTSPELRHEFSLCRVYVISGNFRSFDRRPLEMARAELGADENRGAASTSGQPRAAVVDGSSSSDTSHSGDAHNHEAGAGSSGIHLNASNRVEEPFWEWEELIGHDPYLKHA* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1267 254 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
Pvu5g1267 254 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 4 244 - -
Pvu5g1267 254 MobiDBLite consensus disorder prediction 183 227 - -
Pvu5g1267 254 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Pvu5g1267 254 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Pvu5g1267 254 MobiDBLite consensus disorder prediction 187 210 - -
Pvu5g1267 254 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Pvu5g1267 254 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 4 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1267 Pvu-Chr5 34629135 34630124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1267 1 244 NAC Transcription Factor Family AT5G22380 56.098 9.48e-90 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu5g1267 NAM 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1267 - - gmx:100784960 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1267 5 34629135 34630124 Pvu11g0982 11 9827824 9829229 PCT