Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1259 ATGGAAGGGGTTTCCAGGGAAGCCCACATGTCAATCGCAGCTTCTTCCATGTTTCCTGGCTTCAGATTCTGCCCCACCGATGAGGAGTTGATTTCTTATTACCTTAGGAAGAAGTTGGACGGCCATGAAGAGAGTGTTCAAGTCATTTCTGAGGTTGAGCTCTGTAAATACGAGCCTTGGGATTTACCAGCCAAATCGTTCATTCAATCAGATAATGAATGGTTCTTCTTCTCTCCCCGTGGAAGAAAGTACCCAAATGGTTCACAAAGTAAAAGGGCAACTGAATGTGGATATTGGAAGGCCACCGGAAAAGAGCGTAATGTAAAGTCAGGTTCTAACTTTATAGGAACAAAGAGGACTCTGGTGTTTCACTTGGGGCGTGCACCTAAAGGGGAGAGGACTGAATGGATTATGCACGAGTACTGCATCAATGACAGGTCTCAGGATTCTTTGGTCATTTGTCGGCTGAAGAGGAACACAGAATTCCGTTTGAGCGATCATTCGAACAGAGCTTCTTCAAGTCAAAGGCATCCCGTGAATTCACACGAAAGTGGTTGTGCCATCTCAGAAGGTGGTGGTATAGATCAAAGGGATGTTTGTGAGCAGGACAAAGAGGTAGGATGTAGCTCCAAGAGGAGCAGTAGCAGTTACGGTTCTCCTTCGAATGAGCAAATTGATTCTGTCTCGGAATCGAATCATCGACCAGTTAATGAAGCTACATTGACAGCATCTTCAGATCAACCAAAGGAGGTGTATGAAGAGGATTGTTATGCTGAGATACTAAAGGATGATATCATAAAATTAGACGAATCATCAATCTCGGGAGAGGGTCACACACGAGCAGAGGAACCTGCACCACAAGGCACACAGGGGAGAGAATAA 882 0.4512 MEGVSREAHMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKSGSNFIGTKRTLVFHLGRAPKGERTEWIMHEYCINDRSQDSLVICRLKRNTEFRLSDHSNRASSSQRHPVNSHESGCAISEGGGIDQRDVCEQDKEVGCSSKRSSSSYGSPSNEQIDSVSESNHRPVNEATLTASSDQPKEVYEEDCYAEILKDDIIKLDESSISGEGHTRAEEPAPQGTQGRE* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1259 293 MobiDBLite consensus disorder prediction 209 247 - -
Pvu5g1259 293 MobiDBLite consensus disorder prediction 166 182 - -
Pvu5g1259 293 MobiDBLite consensus disorder prediction 165 194 - -
Pvu5g1259 293 SUPERFAMILY NAC domain 8 158 IPR036093 GO:0003677|GO:0006355
Pvu5g1259 293 ProSiteProfiles NAC domain profile. 17 159 IPR003441 GO:0003677|GO:0006355
Pvu5g1259 293 MobiDBLite consensus disorder prediction 269 293 - -
Pvu5g1259 293 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 11 280 - -
Pvu5g1259 293 Pfam No apical meristem (NAM) protein 19 142 IPR003441 GO:0003677|GO:0006355
Pvu5g1259 293 PANTHER NAC DOMAIN-CONTAINING PROTEIN 89 11 280 - -
Pvu5g1259 293 MobiDBLite consensus disorder prediction 208 251 - -
Pvu5g1259 293 Gene3D NAC domain 26 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1259 Pvu-Chr5 34579149 34582075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1259 4 289 NAC Transcription Factor Family AT2G27300 52.098 2.34e-96 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu5g1259 NAM 1.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1259 - - gsj:114373381 533.102