Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1251 ATGTCTTCCAAGAAGAGAAAAAGGTTTATGAGAGGCCTATTCAACACAAATGGATGTTGTGGATGCAGCAACCCTAAATCCTATGATGTACTCCAACCCTCCCCAAAACTCAAGATATCAGTCTACCAAAACACAAACCCTACCATTTCCGGCGAGAACCAACCCTTCTCCCAACTCCACACAAACCATCAAAACCCTAACAGCAACAACAACATCATGCCAAAACCAAATTCAAAACTCATTCACAGTGTGGCCGTTGAGAAGGACTCAAACGACCCGCACAAGGATTTTCGAGACTCCATACTCCAAATGATCTTCGAGAGACAAATCTACACCAAAACCGATCTTCAAGACCTTCTCGAGTGCTTCCTCCAGTTGAACGCTGCCTGTCATCACCAAGTTATAGTTCGAGCATTCATGGAGATTTGTCAAGAAATCTTCCCCAAGAAGAATATCGACGCTGACGGCAACGAAAATACTGTAAAGAGATCTCAAATTTTGATCCAGAAGTATGTAGTTTTCTTGTTATTAAATATTATACCAAATTAG 549 0.4153 MSSKKRKRFMRGLFNTNGCCGCSNPKSYDVLQPSPKLKISVYQNTNPTISGENQPFSQLHTNHQNPNSNNNIMPKPNSKLIHSVAVEKDSNDPHKDFRDSILQMIFERQIYTKTDLQDLLECFLQLNAACHHQVIVRAFMEICQEIFPKKNIDADGNENTVKRSQILIQKYVVFLLLNIIPN* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1251 182 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 1 159 IPR038933 GO:0045892
Pvu5g1251 182 ProSiteProfiles OVATE domain profile. 86 145 IPR006458 -
Pvu5g1251 182 PANTHER OVATE TRANSCRIPTIONAL REPRESSOR 1 159 - -
Pvu5g1251 182 Pfam Transcriptional repressor, ovate 90 147 IPR006458 -
Pvu5g1251 182 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 84 145 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1251 Pvu-Chr5 34396327 34397013 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Pvu5g1251 Ovate 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1251 - - pvu:PHAVU_005G121000g 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1251 5 34396327 34397013 Pvu5g1251 5 34396327 34397013 ECH
Pvu5g1251 5 34396327 34397013 Pvu11g1005 11 10126415 10126978 PCT