Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1248 ATGGAGTCGCGGATGGATCACTACGAGATCATGGAGCAGATCGGTCGCGGAGCGTTTGGCGCCGCGATTCTGGTGAACCACAAAGCGGAGAAGAAGAAGTACGTGTTGAAGAAAATCAGGCTCGCGCGGCAGACGGAACGATGCAGAAGATCTGCTCATCAGGAGATGGCGCTTATTGCTCGAATTCAGCACCCTTACATTGTGGAATTCAAAGAGGCTTGGGTTGAGAAGGGTTGCTATGTTTGCATTGTTACTGGATATTGTGAAGGTGGAGACATGGCTGCATTGATGAAAAAGTCAAATGGGGTTTACTTTCCTGAGGAGAAACTCTGCAAGTGGTTTACTCAACTACTCTTGGCAGTGGAATACCTGCATTCAAATTTTGTTTTACATCGCGACCTAAAGTGTTCCAATATCTTTCTTACCAAGGATCAAGATGTTCGCCTTGGGGATTTTGGGCTTGCTAAGACACTAAAAGCGGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAACTATATGTGTCCTGAACTGCTTGCAGATATTCCTTATGGATTCAAATCTGACATTTGGTCACTAGGGTGTTGTATATATGAGATGGCTGCTCATCGCCCGGCTTTTAAAGCTTTTGATATGGCAGGTTTGATAAGCAAGATAAACCGTTCCTCTATTGGCCCTCTGCCTCCCTGCTATTCCCCATCTTTGAAAACACTGATAAAGGGCATGCTGAGGAAAAATCCTGAGCATCGTCCAACAGCATCTGAAGTCTTAAAGCATCCTTATTTGTTACCTTATGTTGATCAATATCGTTCATCTTTCTGTACTCCAACAGTCAGTTCTCCTGAAAAGCCAATTTCTGTTGTTCATCATCCTCGAAAAAATAAGCCAGAAGGTCAAAACAGTAGTAGTTCAAGTACGGAGAAAGATAGTTTGATGTCAAATATGAAAAAGACTGCAAATGCAGTGCCGAAGTGTGATGGCAAAAGTACTGAACTAGACATGACCCCAGTTGAGGATGATGGCTCTGAGCAACTTCGGCCTGGTGAAGAAGGAAATGGCTCTATCAAAGTCAATGCCAAAACTGTTGATCAAGTGGTGACAAAGCAGTTTAATAATGATCACAATTCTAATGTTGTATCTAAGCAACCAATAGCAATTAAGAACGTAGTGACAGCATTAAGAAATAGAAAACTTAGAGAGACAAGTTCTCCAATAAGGGGTAATAGCATAAAGGGTGGTGGTGTGTTGACGCATAAAATAAATACAGAGACATTGTCCAAATTGCCCAAACTCAATTTTGGTGCTTGTGATTTGAAGTCGAATTTGGAGGTGCCAACTATTGCACCTTCAAAAGCAACTCCTGATCCTGCAAAAAGATTGCCAGGATCACATACATCAAAGCATCAGTTACCAATGATTGAATCCACACCAAAAACTAAACCTCGACATAGTGTGATTCCACCACTGGGTCCTTCCAAGCAAGTAGAAGGTCGTGAAGTTCCTGCTAAGCCAAGGCAAAAGACTCCTCCAAGCTTACTTAAGCCACCTTCTTTTCCAGGACACGTGAGACAGGTTGGGTTTGATGTTCCAAATGCAGCAAATTATACTGGAAAGTCAAGTCCAAACAAAATGGTTCGGGAGCCTAAGATAAGCCATAACCAGTTGACCAACAGTCTTCTACCACATGTTTCTAGAGAGATTACCCGAGAGCCTTTAAAGACTTTTGAAAGCAGTTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGTCTCATCTTCTTTCTCTATTCAAGGATTCGAACTTTCTGATTTTGCAACCACTTTTATTGACTTAAGTGAAACAACACTTCCTGTTCAAGAGAATTTAAACAACGCTGAAAATGTGAAATCACGAGCAGATAGCAGTTCACCTGCATCCTATTCGCATTTTGAGATGTCTGAACAATTTTCTGAGGAAACCCCTGTCATTACGCCACACTTTCAGAAGATAATGACTAGTGACGAGAAAGTATGTCCCAGTTTATCTCCAGATCATTCAGTTCAAGATGCTGAGGTAATGTTTGCTTCTGATGATAGTTTTCCCATAAATCAGAGGACCATATCTGCTGGCTCCAGGTGTGATAATACATCTGTAGAATCCTCTGCTGAAATCACTGAAGAAATGGAAGATGTTGAAGATATTTCTAAGGAGATGTCTTCAACCAAGTCTCCTCAACAGCCAGTCCCCATTTCTGGAGAAAAGTCTGTTTGTGAAGAATTTGGTCCAGCAAGCAAGCCAAATAATATGCTTGATAGAGTTAGCCAGCCAAAACTTATGTGCCTCTCCAGTGATGACAAATTTATGGTGAGGGGAAGACTGTCATCAGCAGAAGAAACTGCTCCTTTGATTATCTCCACTAAAATTTCAAGCCAGAAAGTTTTACAAGAGGAGAAAGGAACTGTTCTGGGACCAGAAAGGCCAGCTGTTGGCCATTTTCCTCCAGCTTTTGATGATGTCATTCATGTCATACGCCATAGCAGTTATCGTGTGGGGAGTGAGCAGCCAGTGAAGGAATCCGTGGACATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAACATTATAAGGGATGATATAGAAATGAGAAACGTGAGCACTCCTTTGACCCTAAAATCTTCTAATTGCTCAGAAGCTATTGGCAAGTCAAATATTTCTGAAAATATGGAAATTAGAAACTTGAGTAATCCTCCTAACTTAAAATCTTCAAGTTGCATCGACTCGTTGAGCATGAAATCAAGTTTTTCTGATCATCCTGGTGTTAGGGAACAAGATGTGGAAAATCCTGATTCTCTTGTTGCAAAATCTGATTCTCCTGAGTATTCCGGATACACTCCTACAGCTGAAGTGGAACCACCAGCAAAGGAAATTTTGGATGTTAAATCTTCCAGGCAGAGAGCTGAGGCCCTTGAAGGACTGTTAGAATTATCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTGCAGTTGTTCTGAAGCCTTTTGGAAAAGATAAAGTTTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTTTAAAAGGATTGATGATTGACGAAAGTGCAGGGCGCAGTTAA 3120 0.4173 MESRMDHYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAALMKKSNGVYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLLPYVDQYRSSFCTPTVSSPEKPISVVHHPRKNKPEGQNSSSSSTEKDSLMSNMKKTANAVPKCDGKSTELDMTPVEDDGSEQLRPGEEGNGSIKVNAKTVDQVVTKQFNNDHNSNVVSKQPIAIKNVVTALRNRKLRETSSPIRGNSIKGGGVLTHKINTETLSKLPKLNFGACDLKSNLEVPTIAPSKATPDPAKRLPGSHTSKHQLPMIESTPKTKPRHSVIPPLGPSKQVEGREVPAKPRQKTPPSLLKPPSFPGHVRQVGFDVPNAANYTGKSSPNKMVREPKISHNQLTNSLLPHVSREITREPLKTFESSSKGMQTDSSNSVSSSFSIQGFELSDFATTFIDLSETTLPVQENLNNAENVKSRADSSSPASYSHFEMSEQFSEETPVITPHFQKIMTSDEKVCPSLSPDHSVQDAEVMFASDDSFPINQRTISAGSRCDNTSVESSAEITEEMEDVEDISKEMSSTKSPQQPVPISGEKSVCEEFGPASKPNNMLDRVSQPKLMCLSSDDKFMVRGRLSSAEETAPLIISTKISSQKVLQEEKGTVLGPERPAVGHFPPAFDDVIHVIRHSSYRVGSEQPVKESVDMGVQNVDVGKFINIIRDDIEMRNVSTPLTLKSSNCSEAIGKSNISENMEIRNLSNPPNLKSSSCIDSLSMKSSFSDHPGVREQDVENPDSLVAKSDSPEYSGYTPTAEVEPPAKEILDVKSSRQRAEALEGLLELSADLLQQNRLEELAVVLKPFGKDKVSPRETAIWLAKSLKGLMIDESAGRS* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1248 1039 MobiDBLite consensus disorder prediction 297 317 - -
Pvu5g1248 1039 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1248 1039 MobiDBLite consensus disorder prediction 277 355 - -
Pvu5g1248 1039 SUPERFAMILY Protein kinase-like (PK-like) 4 309 IPR011009 -
Pvu5g1248 1039 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 1022 - -
Pvu5g1248 1039 Gene3D Transferase(Phosphotransferase) domain 1 90 332 - -
Pvu5g1248 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Pvu5g1248 1039 CDD STKc_Nek 7 262 - -
Pvu5g1248 1039 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK5-LIKE 1 1022 - -
Pvu5g1248 1039 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Pvu5g1248 1039 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1248 1039 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Pvu5g1248 1039 MobiDBLite consensus disorder prediction 925 963 - -
Pvu5g1248 1039 MobiDBLite consensus disorder prediction 331 346 - -
Pvu5g1248 1039 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1248 1039 MobiDBLite consensus disorder prediction 447 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1248 Pvu-Chr5 34359972 34368173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1248 14 262 MAP Kinase Kinase Kinase AT1G53570 31.890 5.84e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pvu5g1248 Pkinase 1.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1248 K08857 - gmx:100780141 1703.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1248 5 34359972 34368173 Pvu5g1248 5 34359972 34368173 ECH
Pvu5g1248 5 34359972 34368173 Pvu11g1012 11 10239827 10246887 PCT