Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1244 ATGGAAGGTGTTCAGTTAGGAGAAGTCTTCATCTTGTTTTGTTTTTGTCTGATCTCTACAATGAGTTATGGCGCTACGAACTCAAATGATGTCAAAGTTTTGAATGATTTCAGAAAAGGGTTGGAGAATCCTGAGCTTTTGAAGTGGCCGGAGGAGGGAGATGATCCCTGTGGTCCTCCTTTATGGCCTTTTGTGTACTGTTCTGGAGATAGAGTAAATCAGATTCAGGCCAAGAATCTTGGTCTTAGAGGGTCATTGCCTCAAAACTTTAACCAACTCTCAGAACTCTACAATTTGGGTCTCCAACGCAACAACCTTAGTGGGATGTTGCCCACTTTTAGCGGATTATCCAAATTGGAGTTTGCTTTCTTGGATTACAATAAATTTGATGCAATTCCATCTGATTTCTTTAATGGACTAAGCAGCCTTAGAGTCTTGTCTCTGGAAGAAAATCCACTGAATATGAGTAGTGGTTGGTTGTTTCCCCCGGATTTAGAAAAATCACTACAGTTAACCAACCTTTCTCTGGTGCAATGTAACTTGGTTGGACCATTACCGGATTTTCTGGGCACATTGCCATCTCTCACAAATCTGAGGCTTTCAGGTAACAAGCTGTCTGGTGCCATACCAGCAACTTTTGCACTATCTTCAATCCAGGTTTTGTGGTTGAATAATCAAGAAGGTGGTGGGTTGAGTGGTCCTATTGATGTTATTGCTTCAATGCCTTTCCTTAGACAGGTTTGGCTACATGGAAACCAGTTCACTGGGTCAATTCCTCAGAATATTGGAAATCTAACTTCCTTGCAGGAACTCAATCTCAATAGCAATCAACTTGTTGGCTTGATTCCAGAGTCCCTAGCACTTATGGACCTGGATATCCTTGTGTTAAATAACAACATGCTAATGGGTCCAATACCGAAATTTAAGGCTGCCAATTTTTCGTATGATAACAATTTATTTTGTCAAAATGAGCCTGGACTTGAATGTTCCCCTCATGTTACTATTTTGCTGGATTTTCTAGATAAGCTGAATTACCCTTCTTTTCTCGTTTCTGACTGGTCTGGTGATGAACCATGCACACGCAGCACAGGGTCATGGTTTGGATTGAGCTGCAATTCCAACTCAGAGATATCTATTATCAATCTACCTAGACACAAGCTAAATGGTACACTAAGTCCCTCACTTGCTAAGTTAGATTCACTCCGTCAAATTAGGCTTACAGGAAACAACATAACCGGCTCTGTTCCCACTAATTTCGCCAAATTAACATCTTTGGAGTTGTTGGATTTAAGTTATAACAATCTTGAGCCTCCATTTCCAAATTTTCATAATGATGTGAAGATTATTATTGCGGGTAATCCTCTTCTGAATCAAACTGGAGGAAGTCCCAGTCCTGTGCCTATTAACAGCCCACCTTCACCACAAAATCCATCAGAGCCTCCATCCTCTCATAAGCCACCTGTTTCAGATCAGAGTTCAAGATCAAATCAATCCAAGCCCAATGACTTGAAAAGATTCAAAATAGCAGCAATAATGGCTGGAGTTGTATTGTTTACAGTTGTAACACTTTTGGTTGCTTATCTCTTCCTATGTTGTAGAAAGAACAAAAAAGCCTCCTTGGATGCTCCAAGTTCCATTGTGGTTCACCCTCGCAATCCATCTGATCCTGACAACATTGTTAAAATTGCAGTTTCGAACGCCACTGGAAGTTTGTCAACAAAGACTGGTACAAGTTCTCTTAGTAACATCAGTGGTGAAACTCAAAACTCTCACATAATTGAGGATGGCAACCTTGTCATCTCTATACAAGTACTACGCAAGGTTACCAATGACTTTGCTTCAGAAAATGAACTAGGTCGTGGAGGGTTTGGGACTGTTTACAGTGGGGAACTTGAAGATGGGACAAAGATCGCAGTGAAGAGAATGGAGCATGGGGTTATTAGCAGTAAGGCAATAGAGGAGTTTCAAGCCGAAATAGCTGTTCTTTCCAAGGTACGGCACCGCCATCTGGTATCCTTGTTGGGGTATTCCGTTGAAGGCAATGAAAGACTTTTGGTTTATGAATATATGTCTCTTGGAGCTCTAAGCCAGCATCTTTTTCATTGGAAAAGCTTGAAGTTGGAGCCTTTATCTTGGTCAAAGAGACTTGCAATAGCACTAGATGTTGCCAGAGGCATAGAATACCTTCACAGTCTTGCCCGTCAGACTTTTATTCATCGAGATCTCAAGTCTTCTAATATCTTATTGGGTGATGATTTCCGGGCTAAAGTTTCAGATTTTGGTTTGGTGAAGCATGCCCCAGACAGTGAGAAGTCTGTAGCTACCAAGCTTGCTGGGACATTTGGATACCTTGCCCCTGAATATGCAGTGATGGGGAAAATCACCACAAAAGTTGATGTGTTCAGCTACGGTGTGGTTCTGATGGAACTTCTGACTGGACTTGTGGCACTTGATGAGAGCCGGCCAGAGGAGAGCCGGTATTTGGCTGAATGGTTTTGGCGAATTAAATCAAGCAAGGAGAAGCTTATGGCTGCCATTGATCCAGTTGTGCAAGCATCTGAAGAAACTTTTGAGAGCATAACTATTGTAGCTGAACTTGCTGGACATTGCACTGCAAGGGAAGCGCATCGTAGGCCAGATATGGGTCATGCAGTCAATGTCCTGGCAGCATTAGTGGAAAAATGGCAACCAGTTGATGATGAATTAGACTGCTACTCTGGCATCGACTACACAAGACCACTTCCTCAGATGTTGAAGATTTGGAAGGAAGCTGAAGGCAAAGAGTTCAGCTATGCTTCTAGTCTTGACAACAGCAGAAGCAGTATTGCAGCCAGGCCTACTGGGTTTGCAGACTCTTTTACTTCTGCTGATGCAAGATGA 2880 0.4226 MEGVQLGEVFILFCFCLISTMSYGATNSNDVKVLNDFRKGLENPELLKWPEEGDDPCGPPLWPFVYCSGDRVNQIQAKNLGLRGSLPQNFNQLSELYNLGLQRNNLSGMLPTFSGLSKLEFAFLDYNKFDAIPSDFFNGLSSLRVLSLEENPLNMSSGWLFPPDLEKSLQLTNLSLVQCNLVGPLPDFLGTLPSLTNLRLSGNKLSGAIPATFALSSIQVLWLNNQEGGGLSGPIDVIASMPFLRQVWLHGNQFTGSIPQNIGNLTSLQELNLNSNQLVGLIPESLALMDLDILVLNNNMLMGPIPKFKAANFSYDNNLFCQNEPGLECSPHVTILLDFLDKLNYPSFLVSDWSGDEPCTRSTGSWFGLSCNSNSEISIINLPRHKLNGTLSPSLAKLDSLRQIRLTGNNITGSVPTNFAKLTSLELLDLSYNNLEPPFPNFHNDVKIIIAGNPLLNQTGGSPSPVPINSPPSPQNPSEPPSSHKPPVSDQSSRSNQSKPNDLKRFKIAAIMAGVVLFTVVTLLVAYLFLCCRKNKKASLDAPSSIVVHPRNPSDPDNIVKIAVSNATGSLSTKTGTSSLSNISGETQNSHIIEDGNLVISIQVLRKVTNDFASENELGRGGFGTVYSGELEDGTKIAVKRMEHGVISSKAIEEFQAEIAVLSKVRHRHLVSLLGYSVEGNERLLVYEYMSLGALSQHLFHWKSLKLEPLSWSKRLAIALDVARGIEYLHSLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKHAPDSEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLVALDESRPEESRYLAEWFWRIKSSKEKLMAAIDPVVQASEETFESITIVAELAGHCTAREAHRRPDMGHAVNVLAALVEKWQPVDDELDCYSGIDYTRPLPQMLKIWKEAEGKEFSYASSLDNSRSSIAARPTGFADSFTSADAR* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1244 959 SMART serkin_6 612 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1244 959 ProSitePatterns Serine/Threonine protein kinases active-site signature. 737 749 IPR008271 GO:0004672|GO:0006468
Pvu5g1244 959 ProSitePatterns Protein kinases ATP-binding region signature. 618 640 IPR017441 GO:0005524
Pvu5g1244 959 MobiDBLite consensus disorder prediction 460 500 - -
Pvu5g1244 959 SUPERFAMILY Protein kinase-like (PK-like) 590 888 IPR011009 -
Pvu5g1244 959 PANTHER OSJNBA0070M12.3 PROTEIN 9 959 - -
Pvu5g1244 959 Gene3D Phosphorylase Kinase; domain 1 573 689 - -
Pvu5g1244 959 Pfam Protein tyrosine and serine/threonine kinase 615 883 IPR001245 GO:0004672|GO:0006468
Pvu5g1244 959 Gene3D Transferase(Phosphotransferase) domain 1 690 905 - -
Pvu5g1244 959 MobiDBLite consensus disorder prediction 465 484 - -
Pvu5g1244 959 SMART LRR_typ_2 93 115 IPR003591 -
Pvu5g1244 959 SMART LRR_typ_2 192 215 IPR003591 -
Pvu5g1244 959 SMART LRR_typ_2 116 139 IPR003591 -
Pvu5g1244 959 SMART LRR_typ_2 422 444 IPR003591 -
Pvu5g1244 959 SMART LRR_typ_2 398 421 IPR003591 -
Pvu5g1244 959 SMART LRR_typ_2 140 163 IPR003591 -
Pvu5g1244 959 SMART LRR_typ_2 265 288 IPR003591 -
Pvu5g1244 959 CDD STKc_IRAK 618 888 - -
Pvu5g1244 959 MobiDBLite consensus disorder prediction 485 499 - -
Pvu5g1244 959 Gene3D Ribonuclease Inhibitor 331 459 IPR032675 -
Pvu5g1244 959 SUPERFAMILY L domain-like 66 457 - -
Pvu5g1244 959 PANTHER OSJNBA0070M12.3 PROTEIN 9 959 - -
Pvu5g1244 959 ProSiteProfiles Protein kinase domain profile. 612 891 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu5g1244 959 Gene3D Ribonuclease Inhibitor 27 326 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1244 Pvu-Chr5 34333976 34338000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1244 84 906 Receptor kinase-like Gene Family AT1G55610 30.410 2.50e-81 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pvu5g1244 PK_Tyr_Ser-Thr 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1244 - - gmx:100785090 1649.8