Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu5g1235 ATGGGGTTTTTGTTGAAAGAAGCTTTGAGGACTCTCTGCGGTCGGAATCAATGGTCTTATGCTGTGTTCTGGAAGATCGGTTGCCACAATTCCAAGTTATTAATCTGGGAAGAATGCTACTATGAACCTTTGCCATGCCCTCCACCCATGTTTGGGATAGGAGATTTGCCTTACCATAATGGGGGAGGACACTGGTTTTCTTCAGGGTCTCAGTCATCTCAACTCGGGATTCAAGAGGAGGACCGAGTCAATTCTTTGATTAAGAAAATGACTGTAAACAATTCAGTTATCATTGCAGGTGAAGGTATGATTGGACGAGCTGCATTTACAGGAAACCATCAGTGGATTCTTTTGAACAGTTTCACAAAAGATGTAAATCCACCTGAGTTATACCCTGAAGTGCATCACCAATTTTCAGCTGGAATACAGACGGTAGCAGTTATTCCTGTACTTCCTCATGGGGTTGTTCAACTTGGCTCTTTCTTACCTATAAATGAGAATATGGGTTTTGTGAATGATGTGAAGAGCTTGATCTTGCAATTAGGATGGGTTCCTGGTGCTCTTCTATCTGAAGACTATTCCGAAAATCCCTCTATTGAACGACTTGCTGGACCTTCCATTACTGGTGTGCCGCTGTCGATTGATCCACCTGCCGTTGCTTCAAATGGCACTCCCTCAGTAACTGATGTCTCCAATCAGAAAAGTAATCCATCTCATACTTCAAGGCGTATTGTTCATACACCTTGCCCCTTAAATGCAGAGACAAATACCTACCAGGGTTCTGCACGGACACCAGAAACCTGTAAATTGAACCGAATATCCAGTAACCATTGCCAACCAAAGGTTATTCCAATGAGTAAAGCAAACTTTTCTGGCCAACAAGAGAGTAGAGCTATGGAGGCTGAAGTGATAACCTCAGATGTTGATTCATGCCTGCAGCAGCATTCTGTTTCATATAATGCAAGATCTGCCTTCGATAACTTGACTACTTCTGGGTCTTTTGGTCAATCTTGTCTAAGTGATGATCATCTAACATTAATGGAGCAACAAATCATATCAGCCATTGGGAATCGAGATAATGTTAATCCTTTTTTTAATGTGTCAGGTACCTTAAACATGCCTCATCCAAACACAGATAGAGGCCACATACTTGGTCACAGTATGAGTTCTAGCAGTGCTCCTTTACAGGGAGGAATCCCAATACATGGTGGAATGAGTACTCTTTTGAGGTCAAATCTGATTACTAGTCCTGGTTCAAAATCTCCCAAAGCATCCACAGGTGATTTATCTGGAGTAGAAGTTGGGATTGGACTTCAAAATTCTGATTCTTCAACTAAAGCAAGGGGTTGTTCTTCGAAGAATTCGACTAGTCAATCCGGCACCTTTCCCATGCATGTAGAAGGCTCTAATCAGAACATGCTCCCTGTAGATTTCAAGTGTGTTTCAACAAATCAAAAGATAGACTATGATTTGCTTCAGGCCCCTAACCTCCCCACTTTCCATGTTGAGAAACGTTTGCCCATTAGTGGTCAAATCCCTGGTTTTGCCCATGATTGCCTTAGTAAAGAGGGTAGTATTCAATCTATGATGGCAATGAATCCTAAACTCAAACTAGATTGTACTAAACCTCCATCAGGTGATGATGACTTGTTTGATGTTTTAGGGGTAGATATGAAAAACAAATTGCTGAATGGAAATTGGAATAAACTCTTTACAGACGAATTGGATGCAAATACAGAAAATATGGACAAGAAGTTAGATCCTATGAATATGCTGGACACAACTACAAATCCGGATATATATTCAGTTAAAGAAGCAATAGACAGTGGCATTTTTTCTGGGACGGGAACAGACCACCTCTTGGATGCAGTGGTCTCCAAAGCCAAATCTGTTGTAAAACAGGATTCTGATGACATGTCGTGCAGGACAACATTGACAAGGAATAGTACCTCCTCTGTTCCCTCTCCTGCCTGCAGGCCGGTTATGTCTGGTCATTTCCAAGGGGGAATATTTGATTTTCCTAAGAATGGTGGTAAAACAGGTGTCACAGAAGCTAGTATTAGGTCCAGATGTAACAAGGAAGATGCTGGAAACTGTTCTCAAACTAGTTCTGCTTATGGCTCCCAACTTAGTTCGTGGGTTGAGAACAGTGGGAGTGTTAAACGTGAGAATAGTGTTTCAACTGGATACTCAAAGCAGCCAGATGAGGCTTGCAAGCCCAATCGTAAAAGGCTTAAACCAGGAGAGAATCCCAGACCTCGTCCGAAAGATCGCCAAATGATTCAAGATCGAGTGAAAGAGTTACGAGAAATTGTGCCAAACGGAGCAAAATGTAGCATAGATGCACTTTTGGAGCGGACCATTAAGCACATGCTTTTCTTGCAAAGTGTGACAAAGCATGCTGACAAGCTAAAACAAACAGGGGAGTCTAAGATTATCAATAAGGAAGGTGGGCTGCTTTTGAAAGACAACTTTGAGGGAGGAGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGCCCTATTGTAGTTGAGGATCTGAATCCTCCTCGTCAAATGCTAGTGGAGATGCTTTGTGAGGAGCAAGGTTTCTTTTTGGAAATAGCCGACTTAATCAGAGGATTAGGTTTAACCATATTGAAAGGAGTAATGGAAGCTCACAATGACAAAATCTGGGCACGCTTTGCTGTTGAGGCAAACAGGGATGTAACAAGGATGGAAATATTCATGTCACTTGTTCGTCTTTTGGAGCAAACAGTGAAGGGAAAAGCATCTTCATCCAATGCAATTGATAACATGGTGTACCACACTTTTCCACAGACTGCTCAGATACCAGCAACTGGAAGGCCTAGTGGTTTGCAATGA 2871 0.4211 MGFLLKEALRTLCGRNQWSYAVFWKIGCHNSKLLIWEECYYEPLPCPPPMFGIGDLPYHNGGGHWFSSGSQSSQLGIQEEDRVNSLIKKMTVNNSVIIAGEGMIGRAAFTGNHQWILLNSFTKDVNPPELYPEVHHQFSAGIQTVAVIPVLPHGVVQLGSFLPINENMGFVNDVKSLILQLGWVPGALLSEDYSENPSIERLAGPSITGVPLSIDPPAVASNGTPSVTDVSNQKSNPSHTSRRIVHTPCPLNAETNTYQGSARTPETCKLNRISSNHCQPKVIPMSKANFSGQQESRAMEAEVITSDVDSCLQQHSVSYNARSAFDNLTTSGSFGQSCLSDDHLTLMEQQIISAIGNRDNVNPFFNVSGTLNMPHPNTDRGHILGHSMSSSSAPLQGGIPIHGGMSTLLRSNLITSPGSKSPKASTGDLSGVEVGIGLQNSDSSTKARGCSSKNSTSQSGTFPMHVEGSNQNMLPVDFKCVSTNQKIDYDLLQAPNLPTFHVEKRLPISGQIPGFAHDCLSKEGSIQSMMAMNPKLKLDCTKPPSGDDDLFDVLGVDMKNKLLNGNWNKLFTDELDANTENMDKKLDPMNMLDTTTNPDIYSVKEAIDSGIFSGTGTDHLLDAVVSKAKSVVKQDSDDMSCRTTLTRNSTSSVPSPACRPVMSGHFQGGIFDFPKNGGKTGVTEASIRSRCNKEDAGNCSQTSSAYGSQLSSWVENSGSVKRENSVSTGYSKQPDEACKPNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIINKEGGLLLKDNFEGGATWAYEVGSQSMVCPIVVEDLNPPRQMLVEMLCEEQGFFLEIADLIRGLGLTILKGVMEAHNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKGKASSSNAIDNMVYHTFPQTAQIPATGRPSGLQ* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu5g1235 956 MobiDBLite consensus disorder prediction 717 734 - -
Pvu5g1235 956 MobiDBLite consensus disorder prediction 717 760 - -
Pvu5g1235 956 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 956 IPR043561 GO:0003700|GO:0006355
Pvu5g1235 956 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 745 794 IPR011598 GO:0046983
Pvu5g1235 956 MobiDBLite consensus disorder prediction 438 462 - -
Pvu5g1235 956 CDD bHLH_AtLHW_like 749 818 - -
Pvu5g1235 956 MobiDBLite consensus disorder prediction 736 760 - -
Pvu5g1235 956 MobiDBLite consensus disorder prediction 215 244 - -
Pvu5g1235 956 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 177 IPR025610 -
Pvu5g1235 956 MobiDBLite consensus disorder prediction 219 244 - -
Pvu5g1235 956 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu5g1235 Pvu-Chr5 34151294 34158564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu5g1235 541 950 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 54.589 4.62e-121 381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu5g1235 - - gmx:100787748 1501.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu5g1235 5 34151294 34158564 Pvu5g1235 5 34151294 34158564 ECH
Pvu5g1235 5 34151294 34158564 Pvu11g1019 11 10417317 10423980 PCT